PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00071496001
Common NameGSBRNA2T00071496001, LOC106351935
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 293aa    MW: 32181.2 Da    PI: 8.8648
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00071496001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.00128099221
                         EETTTTEEESSHHHHHHHHH CS
              zf-C2H2  2 kCpdCgksFsrksnLkrHir 21
                         +C+ Cgk+F ++  L  H+r
  GSBRNA2T00071496001 80 PCTECGKTFWSWKALFGHMR 99
                         5******************8 PP
2zf-C2H210.70.0017165187123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C+ C+k+F ++  L  H  +H
  GSBRNA2T00071496001 165 FECGGCKKVFGSHQALGGHRASH 187
                          89************999999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.80679106IPR007087Zinc finger, C2H2
SMARTSM003550.01179101IPR015880Zinc finger, C2H2-like
PfamPF139124.7E-879103IPR007087Zinc finger, C2H2
SuperFamilySSF576673.2E-880101No hitNo description
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.0E-481101IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.2E-8160187No hitNo description
PfamPF139121.2E-7164188IPR007087Zinc finger, C2H2
PROSITE profilePS501579.66165192IPR007087Zinc finger, C2H2
SMARTSM003553165187IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280167187IPR007087Zinc finger, C2H2
SuperFamilySSF576671.61E-5229256No hitNo description
PROSITE profilePS501579.64230257IPR007087Zinc finger, C2H2
SMARTSM003550.11230252IPR015880Zinc finger, C2H2-like
PfamPF139123.2E-11230254IPR007087Zinc finger, C2H2
PROSITE patternPS000280232252IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MTTNNSDSDP NFHTPLNPTS NAIIPFYRTP NLQLALSPSY DQSPRKKRTK TVALPSSSSP  60
KPKPKYPRKP DPNAPKITRP CTECGKTFWS WKALFGHMRC HPERQWRGIN PPPNHRGPTP  120
ASFSNQNQRS PNWVSLMTEE DHEVASYLLM LANSTPSSSS SGERFECGGC KKVFGSHQAL  180
GGHRASHKNV KGCFAITNVA DDPMTVTTTP LTTPSDQDHQ GKIVTFMGNH KCNICFRVFS  240
SGQALGGHMR CHWEKEEETM VGGAFDLNVP ATIQDISTSD TTGCSLDLRL GL*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the germ cells following microspore division, increases during development and persists into mature pollen. {ECO:0000269|PubMed:24876252}.
UniprotTISSUE SPECIFICITY: Expressed exclusively in pollen. {ECO:0000269|PubMed:24876252}.
Functional Description ? help Back to Top
Source Description
UniProtMediates the regulation of male germ cell division by DUO1. {ECO:0000269|PubMed:24876252}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00071496001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Activated by the transcription factor DUO1. {ECO:0000269|PubMed:21285328}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022573490.10.0zinc finger protein ZAT3-like
SwissprotO654991e-152ZAT3_ARATH; Zinc finger protein ZAT3
TrEMBLA0A078HSF60.0A0A078HSF6_BRANA; BnaA03g53220D protein
STRINGBra017706.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46191836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.11e-143C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]