PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00071510001
Common NameGSBRNA2T00071510001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 212aa    MW: 23344 Da    PI: 4.399
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00071510001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.63.2e-2014105199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          ffkv++p+ +++s  + +pk+f e+ + ++  + t +l+   g +W+v +  +k +g+ ++t+GW++F+++++Lk g+f++F +dg+++f
  GSBRNA2T00071510001  14 FFKVFLPETASES--MAIPKSFNEHLQ-DPLPHETAKLQGIGGGVWTVSF--KKIRGGAYFTSGWSKFAEDHELKHGEFLTFVYDGSHTF 98 
                          8999967666665..8******95554.4445569***************..********************************998888 PP

                          ..EEEEE-S CS
                   B3  91 elvvkvfrk 99 
                             v+vf +
  GSBRNA2T00071510001  99 --EVSVFGR 105
                          ..8888766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.04E-2410106IPR015300DNA-binding pseudobarrel domain
CDDcd100172.23E-2112103No hitNo description
PROSITE profilePS5086313.45112106IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-2312106IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.1E-2414106IPR003340B3 DNA binding domain
PfamPF023623.6E-1714104IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MSESDEDVVD LPRFFKVFLP ETASESMAIP KSFNEHLQDP LPHETAKLQG IGGGVWTVSF  60
KKIRGGAYFT SGWSKFAEDH ELKHGEFLTF VYDGSHTFEV SVFGRSELVA ADSNEGDDPS  120
FHAGEDDEVS QSINPVDSDD TVSVAEGFPN LEVESNPCFT TILKKRIYDL LIPADVVKEH  180
GLTFCDRIKY IDGEGILDGK VHSIKITIIR G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A1e-151310610102At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00071510001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892221e-117AC189222.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010M19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009138341.11e-131PREDICTED: B3 domain-containing protein REM20-like isoform X2
SwissprotQ8LAV51e-57REM20_ARATH; B3 domain-containing protein REM20
TrEMBLA0A078HSG01e-152A0A078HSG0_BRANA; BnaA03g53170D protein
STRINGBra017692.1-P1e-110(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.16e-60B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]