PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00071657001

Common Name

GSBRNA2T00071657001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NF-YB

Protein Properties

Length: 249aa MW: 28398.4 Da PI: 7.236

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00071657001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	77	2.7e-24	98	189	3	92
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplk.vy.lkky 90 ++d+ lP a +++i+k++lPa+ ++++da++++ ec +efi +++se+++ c++e+++ti+++ +l al lGf +yve++ +y +ky GSBRNA2T00071657001 98 KEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLISSESNEVCNKEDKRTIAPEHVLKALQVLGFGEYVEEVYsAYeQHKY 187 6899**************************************************************************998514423455 PP NF-YB 91 re 92 GSBRNA2T00071657001 188 ET 189 44 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	5.7E-39	95	226	IPR009072	Histone-fold
SuperFamily	SSF47113	8.22E-35	99	227	IPR009072	Histone-fold
Pfam	PF00808	1.7E-21	101	166	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MHNNTVRLEK EQSYKKILYA LKELKWRIHA HFFIHGTKTE NNIIGPLFGQ SQTKKGTYKM 60 NQHNVIHGTS NLPLSFIIVF KLRFCREIKT MDLVGKSKED ASLPKATMTK IIKEMLPADV 120 RVARDAQDLL IECCVEFINL ISSESNEVCN KEDKRTIAPE HVLKALQVLG FGEYVEEVYS 180 AYEQHKYETM QDSQRSVKMN TGAEMTEEEA ATEQQRMFAE ARARMNGGGV SVPQPEQQLD 240 TQQSNLQN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_B	4e-34	99	222	12	133	Transcription Regulator NC2 beta chain
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.1961	0.0	flower\| seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00071657001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC787675	4e-60	KC787675.1 Brassica napus transcription factor subunit NF-YB12 (NF-YB12) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013718884.2	1e-136	protein Dr1 homolog
Refseq	XP_022562933.1	1e-136	protein Dr1 homolog
Swissprot	P49592	3e-96	NC2B_ARATH; Protein Dr1 homolog
TrEMBL	A0A078HQ88	0.0	A0A078HQ88_BRANA; BnaAnng06230D protein
TrEMBL	A0A3P6ABQ0	0.0	A0A3P6ABQ0_BRACM; Uncharacterized protein
STRING	Bra028668.1-P	1e-135	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3828	26	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23090.2	1e-89	nuclear factor Y, subunit B13

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]