PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00071682001
Common NameGSBRNA2T00071682001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 183aa    MW: 20654.8 Da    PI: 5.4731
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00071682001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.91.9e-1680130255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+++AeIrdp +  k  r++lg+f +  +Aa+a++ a+ kl+g
  GSBRNA2T00071682001  80 RYRGVRRRP-WGKFAAEIRDPAK--KGSRVWLGTFESDVDAARAYDCAAFKLRG 130
                          7********.**********954..34**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.1E-3180139IPR001471AP2/ERF domain
SMARTSM003802.4E-3580144IPR001471AP2/ERF domain
PfamPF008471.9E-1180130IPR001471AP2/ERF domain
PROSITE profilePS5103224.76480138IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-2280139IPR016177DNA-binding domain
PRINTSPR003673.2E-138192IPR001471AP2/ERF domain
CDDcd000181.74E-2288138No hitNo description
PRINTSPR003673.2E-13120140IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MATFEESSDL DAIQKHLFED FMGDFDFDAS CVSGLWYIEP AMNQVPKQEP DSSSAHETDQ  60
SVSTRKKAKR LEEEEEEQRR YRGVRRRPWG KFAAEIRDPA KKGSRVWLGT FESDVDAARA  120
YDCAAFKLRG RKAVLNFPLD AGKYEAPVNS GRKRKRSDVK EELQRSQGNS SSSSNDGETT  180
CE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-2879151469ATERF1
3gcc_A8e-2879151469ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.145470.0seed
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00071682001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3507101e-118AY350710.1 Brassica oleracea clone BAC Bo37N21, partial sequence.
GenBankHQ6139481e-118HQ613948.1 Brassica napus ethylene response factor 50 (ERF50) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009125693.11e-133PREDICTED: ethylene-responsive transcription factor ERF106-like
SwissprotQ9LY052e-84EF106_ARATH; Ethylene-responsive transcription factor ERF106
TrEMBLA0A078HTW51e-131A0A078HTW5_BRANA; BnaAnng06420D protein
TrEMBLM4EIS51e-131M4EIS5_BRARP; Uncharacterized protein
STRINGBra028690.1-P1e-132(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32292766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.11e-72ERF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Kim H,Go YS,Suh MC
    DEWAX2 Transcription Factor Negatively Regulates Cuticular Wax Biosynthesis in Arabidopsis Leaves.
    Plant Cell Physiol., 2018. 59(5): p. 966-977
    [PMID:29425344]