PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00072040001
Common NameGSBRNA2T00072040001, LOC106376448
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 577aa    MW: 64394.7 Da    PI: 4.7135
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00072040001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS438.25.8e-1342065763374
                 GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                          + L++cA+a+s+g+ e+a +++++l++++s +gdp qR+aay++e+Laar+a s++ lykal+++e +   s+e+laa+++++ev+P++k
  GSBRNA2T00072040001 206 QILISCARALSQGKSEEALSMVNELRQIVSIQGDPSQRIAAYMVEGLAARMAASGKFLYKALKCKEPP---SDERLAAMQVLFEVCPCFK 292
                          78*****************************************************************9...9****************** PP

                 GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefn 179
                          f++l+aN aI +++  e++vHiiDfdi+qG Q+++L+++ as p +g p+lR+Tgv++pes+  s   l+ +g rL+++A+  gv+fef+
  GSBRNA2T00072040001 293 FGFLAANDAIIDSIRDEKEVHIIDFDINQGNQYMTLIKTVASLPvKGRPRLRLTGVDDPESVqrSVGGLRIIGLRLEQLAKDHGVSFEFK 382
                          ********************************************99**************9989999*********************** PP

                 GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269
                          + va++++ +++++L +kpgEal+Vn+++qlh+++desv++ ++rde+L++vksl+Pk+v+vveq++++n+++F+ rf+ea eyysa+fd
  GSBRNA2T00072040001 383 A-VASKTNIVSPSTLGCKPGEALIVNFAFQLHHMPDESVTTVNQRDELLHMVKSLNPKLVTVVEQDVNTNTSPFFPRFMEAYEYYSAVFD 471
                          *.7*************************************************************************************** PP

                 GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv 359
                          sl+++lpres+er++vEr++l+r+ivn+vaceg+er+er e ++kWr+r+++aGF+p p+s ++++++++l+++ +   y+v+ee g+l 
  GSBRNA2T00072040001 472 SLDMTLPRESQERMNVERQCLARDIVNIVACEGEERIERYEVAGKWRARMMMAGFSPRPMSGRVTSNIQSLIKRDYCSKYKVKEEMGELH 561
                          ****************************************************************************666*********** PP

                 GRAS 360 lgWkdrpLvsvSaWr 374
                          ++W++++L+++SaWr
  GSBRNA2T00072040001 562 FCWEEKSLIVASAWR 576
                          **************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.3178556IPR005202Transcription factor GRAS
PfamPF035142.0E-131206576IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MSLVRSAELS AAAAAYRNPK LYSLNENGYN TGGGTSVEMF DPDRSKNTCL TDDSYPSQNY  60
EKYFLDSPTD EFAQQQHPVG SGGASVSSFG SLESFPYQSR PVLGCSMEYQ LPFDSTSTSS  120
MSLFGGYQVA TQSPSMEFDD EQMRSKIQEL ERALLDDEDD DDKMVGIDQL MEIDNEWSPK  180
ESSSEDSNSH ASSKEVISQA TTTPKQILIS CARALSQGKS EEALSMVNEL RQIVSIQGDP  240
SQRIAAYMVE GLAARMAASG KFLYKALKCK EPPSDERLAA MQVLFEVCPC FKFGFLAAND  300
AIIDSIRDEK EVHIIDFDIN QGNQYMTLIK TVASLPVKGR PRLRLTGVDD PESVQRSVGG  360
LRIIGLRLEQ LAKDHGVSFE FKAVASKTNI VSPSTLGCKP GEALIVNFAF QLHHMPDESV  420
TTVNQRDELL HMVKSLNPKL VTVVEQDVNT NTSPFFPRFM EAYEYYSAVF DSLDMTLPRE  480
SQERMNVERQ CLARDIVNIV ACEGEERIER YEVAGKWRAR MMMAGFSPRP MSGRVTSNIQ  540
SLIKRDYCSK YKVKEEMGEL HFCWEEKSLI VASAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-582065766375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00072040001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013671986.10.0scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A078JN450.0A0A078JN45_BRANA; BnaCnng58110D protein
STRINGBo5g034360.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69532744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]