PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00072249001

Common Name

GSBRNA2T00072249001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

ERF

Protein Properties

Length: 254aa MW: 28463.7 Da PI: 5.0493

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00072249001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	46.6	8.5e-15	83	130	2	53
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 + GVr++k +g+W+AeIr+p + r +lg+++t e+Aa a+ a ++++ GSBRNA2T00072249001 83 KPVGVRQRK-WGKWAAEIRHPI----TkIRTWLGTYDTLEQAADAYAAKKLEF 130 678***9.******72....36****************9988775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038123	1.5E-24	4	244	IPR017392	AP2/ERF transcription factor ERF/PTI6
PROSITE profile	PS51032	17.583	83	140	IPR001471	AP2/ERF domain
SMART	SM00380	3.6E-14	83	137	IPR001471	AP2/ERF domain
Pfam	PF00847	2.4E-9	83	130	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.4E-6	84	95	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	4.18E-14	85	130	IPR016177	DNA-binding domain
CDD	cd00018	4.13E-19	85	128	No hit	No description
Gene3D	G3DSA:3.30.730.10	8.5E-19	86	130	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.4E-6	106	122	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MSEPKKRSSL QAKKPSKNHK RKTFQINRLP EDETYQTRKR YVCEIDRPFS HATTQSESES 60 SSCHNDGSKA KTSDVVGRSS VRKPVGVRQR KWGKWAAEIR HPITKIRTWL GTYDTLEQAA 120 DAYAAKKLEF DALSAGVSSV LSENALSDDS ASGFNVDFNF SDLQIPDMGC FVDESLILNA 180 CELDFHLPEE SDQFLNDMNF IGLERDGPNN LPDYDFSDVE FDLGLVGNTI DNKFNFFDRL 240 ATTTTTPLNI ACL*

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00072249001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189573	2e-62	AC189573.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH010N11, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009129581.1	1e-180	PREDICTED: ethylene-responsive transcription factor ERF119-like isoform X3
Swissprot	Q9LUA2	3e-88	EF119_ARATH; Ethylene-responsive transcription factor ERF119
TrEMBL	A0A078HW09	0.0	A0A078HW09_BRANA; BnaA02g27680D protein
STRING	Bra036360.1-P	1e-179	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2537	26	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G25890.2	1e-90	ERF family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]