PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00072255001
Common NameGSBRNA2T00072255001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 394aa    MW: 45005.3 Da    PI: 5.6948
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00072255001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix80.42.6e-2573152286
             trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          W ++e++ Li++rrem+  ++++k++k+lWee+s+kmre+gf rsp +C++kw+nl k++kk ++ ++      s ++++++++e
  GSBRNA2T00072255001  73 WVQDETRILIALRREMDGLFNTSKSNKHLWEEISSKMREKGFDRSPAMCTDKWRNLLKEFKKAAKDQQV-----SGKMSHYKEIE 152
                          **************************************************************9988775.....34556777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-562134IPR009057Homeodomain-like
PROSITE profilePS500908.74665129IPR017877Myb-like domain
SMARTSM007173.0E-669131IPR001005SANT/Myb domain
SuperFamilySSF466894.61E-569141IPR009057Homeodomain-like
CDDcd122039.98E-2971135No hitNo description
PfamPF138371.0E-1872153No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MFVSSEKPRS PIDFYKDDDD DNNNPSSPTS RHINMMIDGD LQPPPHQILL GDNSSSEDHE  60
INTKAPKKRA ETWVQDETRI LIALRREMDG LFNTSKSNKH LWEEISSKMR EKGFDRSPAM  120
CTDKWRNLLK EFKKAAKDQQ VSGKMSHYKE IEDLLRERSK KVTTSYKSVT APSKVDSFMQ  180
FTDKGFEDTG LSFASVEANG RPTLNLERQL DHDGHPLAIA SADAVTANGV PPWNWREPAG  240
NGKSSDGQPF VGKIITVKYG DYTRRVGIDG TAEAIKEAIR SAFRLRTRRA FWLEDEEEVV  300
RSLDRDMPLG NYTLHVDEGI AVRVCHYDES DPLPVHQEEK VFYTEEDYRD FLGRRGWTCL  360
REFDGGFRNI ESMVRNVDSM DDLQPGVLYR GMR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A2e-4067150186DNA binding protein GT-1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.196261e-126seed
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00380DAPTransfer from AT3G25990Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00072255001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013697323.10.0trihelix transcription factor GT-4
SwissprotQ9LU920.0TGT4_ARATH; Trihelix transcription factor GT-4
TrEMBLA0A078HUE90.0A0A078HUE9_BRANA; BnaA02g27740D protein
STRINGBra036354.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28912768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25990.10.0Trihelix family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]