PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00072357001
Common NameGSBRNA2T00072357001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 190aa    MW: 21607 Da    PI: 10.7529
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00072357001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.71.9e-183690256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                         rk+ +++k+q   Le+ F+++++++ +++  LAkkl++t rqV vWFqNrRa+ k
  GSBRNA2T00072357001 36 RKKLRLSKDQSAFLEDTFKEHNTLNPKQKVALAKKLNMTARQVEVWFQNRRARTK 90
                         788899***********************************************98 PP
2HD-ZIP_I/II122.12.7e-3936125191
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          +kk+rlsk+q+++LE++F+e+++L+p++Kv+la++L++++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke  eLr +
  GSBRNA2T00072357001  36 RKKLRLSKDQSAFLEDTFKEHNTLNPKQKVALAKKLNMTARQVEVWFQNRRARTKLKQTEVDCEYLKRCVEKLTEENRRLQKEAMELR-T 124
                          69*************************************************************************************9.4 PP

          HD-ZIP_I/II  91 l 91 
                          l
  GSBRNA2T00072357001 125 L 125
                          4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.75E-182593IPR009057Homeodomain-like
PROSITE profilePS5007116.9083292IPR001356Homeobox domain
SMARTSM003894.0E-163496IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-173690IPR009057Homeodomain-like
PfamPF000468.7E-163690IPR001356Homeobox domain
CDDcd000866.59E-153693No hitNo description
PROSITE patternPS0002706790IPR017970Homeobox, conserved site
SMARTSM003401.1E-2392135IPR003106Leucine zipper, homeobox-associated
PfamPF021832.2E-892125IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MELPGASSFL GRIAANLKLL SRIWLLGWNG GGETSRKKLR LSKDQSAFLE DTFKEHNTLN  60
PKQKVALAKK LNMTARQVEV WFQNRRARTK LKQTEVDCEY LKRCVEKLTE ENRRLQKEAM  120
ELRTLKLSPQ FYGQMTPPTT LIMCPSCERV AGPSSNHHQT HRPVAINPWV ARAGQVAHGL  180
DFEALRPRS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13440SRKKLRL
28492RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that plays a role in auxin-mediated morphogenesis. Negatively regulates lateral root elongation. {ECO:0000269|PubMed:12492842}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00072357001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By indole-3-acetic acid (IAA). {ECO:0000269|PubMed:12492842}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1553471e-158AC155347.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH093K03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013728349.21e-116homeobox-leucine zipper protein HAT2-like, partial
SwissprotP466011e-108HAT2_ARATH; Homeobox-leucine zipper protein HAT2
TrEMBLA0A078HTN71e-138A0A078HTN7_BRANA; BnaA09g18250D protein
STRINGBra017489.1-P1e-113(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15632690
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47370.11e-110Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]