PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00072405001
Common NameGSBRNA2T00072405001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 130aa    MW: 15121 Da    PI: 7.7763
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00072405001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox597.8e-1963115355
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
             Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                          k+ ++tkeq + Le+ F++n++++ +++e LA++l L  rq+ vWFqNrRa++
  GSBRNA2T00072405001  63 KKLRLTKEQSRLLEDSFRQNHTLNPKQKETLAEHLMLRPRQIEVWFQNRRARY 115
                          66789**********************************************96 PP
2HD-ZIP_I/II82.46.4e-2763115254
          HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARt 54 
                          kk+rl+keq++lLE+sF+++++L+p++K++la++L l+prq++vWFqnrRAR+
  GSBRNA2T00072405001  63 KKLRLTKEQSRLLEDSFRQNHTLNPKQKETLAEHLMLRPRQIEVWFQNRRARY 115
                          9***************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.17E-1747115IPR009057Homeodomain-like
PROSITE profilePS5007115.20858118IPR001356Homeobox domain
SMARTSM003897.2E-1160122IPR001356Homeobox domain
PfamPF000464.2E-1663115IPR001356Homeobox domain
CDDcd000861.71E-1463115No hitNo description
Gene3DG3DSA:1.10.10.609.8E-1867115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MAILTENSSN LDLTISTPGF SSSPRSDEGS SGEREQLKLD MNRLPSSHED EELSHGGSAP  60
PCKKLRLTKE QSRLLEDSFR QNHTLNPKQK ETLAEHLMLR PRQIEVWFQN RRARYGFFFF  120
FLIHFLHYW*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00072405001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018455112.15e-71PREDICTED: homeobox-leucine zipper protein ATHB-17-like
RefseqXP_018455149.15e-71PREDICTED: homeobox-leucine zipper protein ATHB-17-like
SwissprotQ8S9N62e-61ATB17_ARATH; Homeobox-leucine zipper protein ATHB-17
TrEMBLA0A078HWE13e-90A0A078HWE1_BRANA; BnaA09g18620D protein
STRINGBo2g134170.11e-65(Brassica oleracea)
STRINGBo9g070030.14e-66(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48902747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.12e-53homeobox-leucine zipper protein 17
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Zhao P, et al.
    ATHB17 enhances stress tolerance by coordinating photosynthesis associated nuclear gene and ATSIG5 expression in response to abiotic stress.
    Sci Rep, 2017. 7: p. 45492
    [PMID:28358040]