PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00072428001
Common NameGSBRNA2T00072428001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family BBR-BPC
Protein Properties Length: 535aa    MW: 61339 Da    PI: 9.4485
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00072428001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind330.25.7e-1012665341301
            GAGA_bind   1 mdddgsrernkgyyepa.aslkenlglqlmssiaerdaki....rernlalsekkaavaerd.....maflqrdkalaernkalverdnk 80 
                          mdddg+  rn+gyyepa a++k nlglqlm si +r++k+    r+ nl +++++++++++      m++    +++++       +++k
  GSBRNA2T00072428001 266 MDDDGF--RNWGYYEPAaATFKGNLGLQLMPSI-DRNTKPfltgRDPNL-MIGQNGPYHHHPeppinMSY----NWINQ-------HKDK 340
                          99**99..9*******999**************.9**************.**********9988888888....*****.......789* PP

            GAGA_bind  81 llalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkk 170
                          ++++l+v++s      ++ ++l++t+s++s+++  ++ +++ +v+        ++++ee ++++k++k +  ++ ++++k+kk +k+k++
  GSBRNA2T00072428001 341 FFNMLPVTTS-----NNYGNILPETSSAQSMRH--HQTIDEYPVK--------HEQVEEIVQTNKKRKPN--TKPGASAKAKKPRKPKEE 413
                          ******9997.....56788*********7766..7888887777........22333333333333333..456778888888888883 PP

            GAGA_bind 171 sekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKm 260
                          s+ks           ++k  kks+d+v+ngv++D+s+lPvPvC+CtGa++qCY+WG+GGWqSaCCtt+iS++PLP+stkrrgaRi+grKm
  GSBRNA2T00072428001 414 SDKS----------IKVKPAKKSVDFVINGVNMDISGLPVPVCTCTGAPQQCYRWGCGGWQSACCTTNISMHPLPMSTKRRGARISGRKM 493
                          3222..........347899********************************************************************** PP

            GAGA_bind 261 SqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                          Sqgafkk+LekLa++G++++np+DLk+hWA+HGtnkfvtir
  GSBRNA2T00072428001 494 SQGAFKKVLEKLASDGFNFGNPIDLKSHWARHGTNKFVTIR 534
                          ****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012268.7E-157266534IPR010409GAGA-binding transcriptional activator
PfamPF062177.9E-93266534IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MDLPRDVDDY IKDTIDHSLG IPISIDALQN KLSAAQESQR RLREQYMSLV SRLKEKEQMI  60
ELARSEASIN AQAVKKFVEE NRKLSGECED LVKQCKKWER ECFLYHQDRE ALMDFGNESD  120
ERARESESRV RELEEQVRTM SDIKFGRVFL EANIKDRSLL SRWEELKPST RKAVSLVAMV  180
KRIEKEKECL ILNLAKAEQE VEIVCEQNRE LDEKNRKLLK QFSSSSYLQC SAERSNKAKN  240
SLKEPRSFNP ILIIQLRNYS IHIFEMDDDG FRNWGYYEPA AATFKGNLGL QLMPSIDRNT  300
KPFLTGRDPN LMIGQNGPYH HHPEPPINMS YNWINQHKDK FFNMLPVTTS NNYGNILPET  360
SSAQSMRHHQ TIDEYPVKHE QVEEIVQTNK KRKPNTKPGA SAKAKKPRKP KEESDKSIKV  420
KPAKKSVDFV INGVNMDISG LPVPVCTCTG APQQCYRWGC GGWQSACCTT NISMHPLPMS  480
TKRRGARISG RKMSQGAFKK VLEKLASDGF NFGNPIDLKS HWARHGTNKF VTIR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.161480.0microspore-derived embryo| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal and petal vasculature, in pollen grains, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00072428001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894990.0AC189499.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB086M23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013696729.10.0protein BASIC PENTACYSTEINE2-like
RefseqXP_013696730.10.0protein BASIC PENTACYSTEINE2-like
SwissprotQ9LDE21e-154BPC2_ARATH; Protein BASIC PENTACYSTEINE2
TrEMBLA0A078HTT90.0A0A078HTT9_BRANA; BnaC05g10870D protein
STRINGBra026196.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28932769
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.31e-154basic pentacysteine 2
Publications ? help Back to Top
  1. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]
  2. Simonini S,Kater MM
    Class I BASIC PENTACYSTEINE factors regulate HOMEOBOX genes involved in meristem size maintenance.
    J. Exp. Bot., 2014. 65(6): p. 1455-65
    [PMID:24482368]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]