PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00072552001
Common NameGSBRNA2T00072552001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 249aa    MW: 27869.4 Da    PI: 8.4804
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00072552001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.00013426123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ykC+ C ksF +   L  H+r+H
  GSBRNA2T00072552001  4 YKCKFCFKSFVNGRALGGHMRSH 26
                         9*********************9 PP
2zf-C2H216.42.6e-05138160123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y+C+ Cgk+F++   L  H  +H
  GSBRNA2T00072552001 138 YTCETCGKVFKSYQALGGHRASH 160
                          9************9999998887 PP
3zf-C2H210.90.0014186208123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++Cp+C ++F +   L  H r+H
  GSBRNA2T00072552001 186 HECPICLRVFASGQALGGHKRSH 208
                          79*****************9999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.3E-4326IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.34E-10326No hitNo description
SMARTSM003550.016426IPR015880Zinc finger, C2H2-like
PfamPF139123.4E-6427IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.138426IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576673.34E-10133160No hitNo description
SMARTSM003550.011138160IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.24138165IPR007087Zinc finger, C2H2
PfamPF139123.5E-11138162IPR007087Zinc finger, C2H2
PROSITE patternPS000280140160IPR007087Zinc finger, C2H2
SMARTSM003550.23186208IPR015880Zinc finger, C2H2-like
PfamPF139124.0E-12186208IPR007087Zinc finger, C2H2
PROSITE profilePS501579.058186208IPR007087Zinc finger, C2H2
PROSITE patternPS000280188208IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MESYKCKFCF KSFVNGRALG GHMRSHMPTL HKFSIQEEEE RPSQLGQASG LREEKHPTMD  60
DDDGSETESS RNIKMKTSQL GYKNELEAEA EPPQSSASDT TTEEDLAFCL MMLSRDKWKK  120
NKVGYKISRA TTTTKGRYTC ETCGKVFKSY QALGGHRASH KKNRVTNKTE QTEYGNVVVA  180
PEKRIHECPI CLRVFASGQA LGGHKRSHGI GNFSVNHQVR GTVSVKEKMI DLNLPAPTEE  240
EEVSMVFQ*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00072552001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893190.0AC189319.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB036H01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022570762.11e-176zinc finger protein ZAT9-like
SwissprotQ9M2021e-108ZAT9_ARATH; Zinc finger protein ZAT9
TrEMBLA0A078HRF60.0A0A078HRF6_BRANA; BnaA09g38600D protein
STRINGBra007545.1-P1e-172(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-111C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]