PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00072616001
Common NameGSBRNA2T00072616001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 116aa    MW: 12510.2 Da    PI: 10.6943
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00072616001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.39.7e-154690147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         +g+W+t  d  l ++v++lG+++W++Iar++   R++k+c++rw + 
  GSBRNA2T00072616001 46 KGPWSTKQDAVLTRLVNKLGPRNWTLIARRIS--RSGKSCRLRWCNQ 90
                         79*****************************8..**********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.0674195IPR017930Myb domain
SuperFamilySSF466894.62E-1542101IPR009057Homeodomain-like
SMARTSM007174.2E-114593IPR001005SANT/Myb domain
PfamPF002493.9E-134690IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.8E-1847101IPR009057Homeodomain-like
CDDcd001675.29E-114889No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MPPATPYTPF DGSSEHAINA AVDLELAAAV GGVRGDSNGG GRSKAKGPWS TKQDAVLTRL  60
VNKLGPRNWT LIARRISRSG KSCRLRWCNQ LDPCLKRKPF TGSLLFHTNQ ESDSF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.109825e-62leaf| microspore-derived embryo| root| seed
Functional Description ? help Back to Top
Source Description
UniProtRequired for male gametophyte (pollen) development. {ECO:0000269|PubMed:22101548}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00072616001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: May be the target of the microRNA (miRNA) MIR393a. {ECO:0000269|PubMed:15258262}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013748036.13e-53transcription factor MYB25
SwissprotO041922e-30MYB25_ARATH; Transcription factor MYB25
TrEMBLA0A078HRI69e-80A0A078HRI6_BRANA; BnaC08g26530D protein
STRINGBo4g025810.16e-40(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2315744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.15e-32myb domain protein 109
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]