PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00072782001
Common NameGSBRNA2T00072782001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 324aa    MW: 35426 Da    PI: 7.1771
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00072782001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.91e-1756104355
                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          + GVr+++ +gr++AeIrdp++   + r++lg+f+ta eAa a+++a+++++g
  GSBRNA2T00072782001  56 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAHEAALAYDRAALSMRG 104
                          56******.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.53455112IPR001471AP2/ERF domain
CDDcd000182.40E-2955111No hitNo description
SMARTSM003804.0E-3355118IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2056112IPR016177DNA-binding domain
PRINTSPR003672.1E-75667IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-2756111IPR001471AP2/ERF domain
PfamPF008473.4E-1158104IPR001471AP2/ERF domain
PRINTSPR003672.1E-77894IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MSTSKTLNHN KPCGTSQTQM VFSVIHQNTT NTTTTTTATT GERRGRRSKQ AEPGRFLGVR  60
RRPWGRYAAE IRDPTTKERH WLGTFDTAHE AALAYDRAAL SMRGTQGRTN FVYTPTDVHT  120
ILTNPNLHSL IVSPYNNQSF LPNSSPQFVI DHLPHYQKYQ QPKHTLPQAV SPVASFKTPV  180
RHQNADTQAF GNSPQNSSSN GSLSSSLDEE SNFFSLEGTN SSTNSGYLDC IVPHHCLKPP  240
AETTTIQNQT GAGFTTPASK AFESPGGFSS SYFDDGDMLM MNRHEFGSCD LSAMVSNYGA  300
GASMSMEDYA IMEPQDFSSP CAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1945111471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the early stages of lateral root primordia formation (PubMed:17630277). Expressed in early floral meristem (stage 1 to 2) (PubMed:19482972). {ECO:0000269|PubMed:17630277, ECO:0000269|PubMed:19482972}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the control of cell division patterns during the early lateral root primordium development. Acts downstream of auxin signaling (PubMed:17630277). Regulated by ARF7 and ARF19 in response to auxin. Co-acts with LBD16 and LBD18 to control lateral root development (PubMed:23749813). Involved in the determination of floral meristem identity and suppression of bract growth. Required for proper conversion of secondary inflorescences to flowers. Acts together with NPR5/BOP2 and NPR6/BOP1 to promote expression of LFY and AP1, two central regulators of floral meristem identity (PubMed:19482972). {ECO:0000250|UniProtKB:Q9LND1, ECO:0000269|PubMed:17630277, ECO:0000269|PubMed:19482972, ECO:0000269|PubMed:23749813}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00072782001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:17630277, ECO:0000269|PubMed:23749813}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009120962.10.0PREDICTED: ethylene-responsive transcription factor ERF086-like
SwissprotQ6J9Q20.0ERF86_ARATH; Ethylene-responsive transcription factor ERF086
TrEMBLA0A078JRN40.0A0A078JRN4_BRANA; BnaAnng26790D protein
STRINGBra002168.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54872650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.11e-165ERF family protein
Publications ? help Back to Top
  1. Chandler JW,Werr W
    Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation.
    J. Exp. Bot., 2014. 65(12): p. 3097-110
    [PMID:24744428]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Chandler JW,Werr W
    DORNRÖSCHEN, DORNRÖSCHEN-LIKE, and PUCHI redundantly control floral meristem identity and organ initiation in Arabidopsis.
    J. Exp. Bot., 2017. 68(13): p. 3457-3472
    [PMID:28859377]
  4. Chandler JW
    Class VIIIb APETALA2 Ethylene Response Factors in Plant Development.
    Trends Plant Sci., 2018. 23(2): p. 151-162
    [PMID:29074232]