PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00072910001

Common Name

GSBRNA2T00072910001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 253aa MW: 26926.1 Da PI: 9.2103

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00072910001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00027	67	89	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H GSBRNA2T00072910001 67 YQCKTCDRTFPSFQALGGHRASH 89 9***********99999998887 PP
2	zf-C2H2	13.8	0.00018	117	139	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H GSBRNA2T00072910001 117 HECGICGAEFTSGQALGGHMRRH 139 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	1.3E-12	66	91	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.71E-8	66	139	No hit	No description
PROSITE profile	PS50157	10.471	67	94	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.028	67	89	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	69	89	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	4.5E-4	115	141	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	1.4E-11	116	141	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.951	117	144	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.047	117	139	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	119	139	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MANCLILLAQ GHSLPHQQPQ TRQLMVSYQE SGNNNNNAYR SSSRRFLETS SSNGTTTSGG 60 RAGYYVYQCK TCDRTFPSFQ ALGGHRASHK KPKAAPGLHD LKKSLVVHGK ANNNKVHECG 120 ICGAEFTSGQ ALGGHMRRHR GAGVAATATP TATLALPASA ATANTVLSLS PMSFDQLSDG 180 PVYPVQAPVK RARSAVVSLD LDLNLPAPED ENRVNGLSVA SKQEHGHEQT QGREEQKSIV 240 LSSAPTLVDC YY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00072910001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493608	1e-85	AB493608.1 Arabidopsis thaliana At3g10470 mRNA for hypothetical protein, partial cds, clone: RAAt3g10470.
GenBank	AC011560	1e-85	AC011560.6 Arabidopsis thaliana chromosome 3 BAC F13M14 genomic sequence, complete sequence.
GenBank	ATAC013428	1e-85	AC013428.6 Arabidopsis thaliana chromosome III BAC F18K10 genomic sequence, complete sequence.
GenBank	CP002686	1e-85	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009122879.1	1e-161	PREDICTED: zinc finger protein ZAT5-like
Refseq	XP_013646415.1	1e-161	zinc finger protein ZAT5-like
TrEMBL	A0A078HRV1	0.0	A0A078HRV1_BRANA; BnaA01g31690D protein
STRING	Bra034116.1-P	1e-160	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2231	27	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10470.1	1e-106	C2H2 family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]