PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00073100001
Common NameGSBRNA2T00073100001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 388aa    MW: 44005.4 Da    PI: 6.1052
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00073100001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.53.6e-061840326
                         S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                         + lC+ffa  G C  Gd+C F+H+
  GSBRNA2T00073100001 18 RILCKFFAH-GACLKGDNCEFSHD 40
                         669**6666.*************5 PP
2zf-CCCH253.3e-084868526
                         --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                         +C f++r G C+yG+rC++ H+
  GSBRNA2T00073100001 48 ICTFYQR-GNCSYGSRCRYEHV 68
                         7**9999.***********997 PP
3zf-CCCH22.22.5e-07121143326
                          S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                          +++C+ +a+ G C++Gd+C+ +Hg
  GSBRNA2T00073100001 121 QPICS-YAAAGDCPRGDQCPHIHG 143
                          68999.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.8E-61641IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-71840IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.7322042IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-42042IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.0514370IPR000571Zinc finger, CCCH-type
SMARTSM003565.5E-54569IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-54567IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-54868IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-54867IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.507118145IPR000571Zinc finger, CCCH-type
SMARTSM003560.0025119144IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-4121143IPR000571Zinc finger, CCCH-type
SuperFamilySSF578502.56E-13177251No hitNo description
Gene3DG3DSA:3.30.40.101.3E-9180246IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001624.54E-4186246No hitNo description
SMARTSM001842.6E-7187244IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.297187245IPR001841Zinc finger, RING-type
PfamPF000979.0E-7187244IPR018957Zinc finger, C3HC4 RING-type
PROSITE patternPS005180211220IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.16274302IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.197274303IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MYAFSLLLFF VLFCVSFRIL CKFFAHGACL KGDNCEFSHD WKDPSNNICT FYQRGNCSYG  60
SRCRYEHVKP SRPPHPSPAS SSTYLSSPFV SQRDLSSSPA WTLASLDDEV NNTDTTKPED  120
QPICSYAAAG DCPRGDQCPH IHGDLCPTCQ KHCLHPFRPE EREEHKRSCE KKHKQLEALK  180
LSQDVECCVC LERVLSKPTP SERKFGILTE CDHAFCIGCI RNWRSSSPST GMDVNSTLRA  240
CPICRKLSYF VVPSVIWFSD PDEKKEIVDN YRDKLRSIDC KHFNFGDGNC PFGTSCFYKH  300
TVKPGSYAWR HHRPPPRRPR PTSGSNFSEI NAFFNMMGNI MSEGGYGPFG FEDSDDDDNE  360
LTSTDMMMLL MNLDMDSDDD DSNEDSY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00073100001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892710.0AC189271.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB023L08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009110145.10.0PREDICTED: zinc finger CCCH domain-containing protein 69-like isoform X1
SwissprotE0X9N41e-167C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A078HVW10.0A0A078HVW1_BRANA; BnaA08g20910D protein
STRINGBo8g071350.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29442763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-142C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]