PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00073314001
Common NameGSBRNA2T00073314001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WOX
Protein Properties Length: 172aa    MW: 19697.3 Da    PI: 7.8836
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00073314001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.72.7e-2072132257
                          T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                          r+R+t+t+ ql++Le+lF + + +ps++++++L+++l    ++ e+++ +WFqNrRa+ k+
  GSBRNA2T00073314001  72 RQRWTPTPMQLQILERLFDQdTGTPSKQKIKDLTEELsqhgQIAEQNICNWFQNRRARSKR 132
                          89*****************99**************************************97 PP
2Wus_type_Homeobox93.61.7e-3071134265
    Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                          ar+RWtPtp Q++iLe+l+++ + tP+k++i+++t+eL+++G+i ++N+ +WFQNr+aR+++kq
  GSBRNA2T00073314001  71 ARQRWTPTPMQLQILERLFDQDTGTPSKQKIKDLTEELSQHGQIAEQNICNWFQNRRARSKRKQ 134
                          789***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.8E-1667135IPR009057Homeodomain-like
PROSITE profilePS5007114.72268133IPR001356Homeobox domain
SuperFamilySSF466894.71E-1770135IPR009057Homeodomain-like
SMARTSM003893.6E-1470137IPR001356Homeobox domain
PfamPF000464.4E-1872132IPR001356Homeobox domain
CDDcd000861.84E-1072134No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MMELDNQQQP NPMKVMTDEQ LETLRKQIAI YATICERLVE MHKTLTSQQD LAGGRMVSLY  60
ADPSIGHKMT ARQRWTPTPM QLQILERLFD QDTGTPSKQK IKDLTEELSQ HGQIAEQNIC  120
NWFQNRRARS KRKQHCGVGS SNNKNGEGEV ETETETLNEK RKRPESFCCS S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125133RRARSKRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.226021e-125root
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00073314001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895411e-174AC189541.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH004A18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013624814.11e-119PREDICTED: WUSCHEL-related homeobox 13-like
SwissprotO817881e-82WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBLA0A078HY361e-125A0A078HY36_BRANA; BnaC03g62360D protein
STRINGBo3g155580.11e-107(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46202851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.15e-80WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]