PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00073452001
Common NameGSBRNA2T00073452001, LOC106433768
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 302aa    MW: 33870.2 Da    PI: 5.8201
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00073452001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH443.9e-14110161155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+++  A+++I++L+
  GSBRNA2T00073452001 110 QRMTHIAVERNRRRQMNEYLSVLRSLMPES---YVQRCDQASTVGGAINFIRELE 161
                          79****************************...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.76E-12108165No hitNo description
PROSITE profilePS5088815.637109160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.1E-13109165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-15109173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-11110161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-9115166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MALEGAISQC SYNGKEAYSN IYTDNEPPFS DLQAALCFLD NQTDNYDSTF LQEGYYGNTT  60
TFLHQPPNEI VINEEKPAAN CDISFHGDMG KNQVTRRTRA KKNKEEISNQ RMTHIAVERN  120
RRRQMNEYLS VLRSLMPESY VQRCDQASTV GGAINFIREL EHRLHLQNLS CETNETSLSG  180
SCMSSATPFS DTFKLPQFSM GSSSVSDNMV LEVNALADIE VSLVESHATL KIRSRRRPKV  240
LLNMVSGLQN LGFIILHLNV STVSDFVLYC FSTKLEDCCK LSSVADISTA VYEMLKMHHD  300
S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110121RMTHIAVERNRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00073452001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013730047.10.0transcription factor bHLH96
SwissprotQ9C7T43e-63BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A078HWF90.0A0A078HWF9_BRANA; BnaA09g15620D protein
TrEMBLA0A397XUL60.0A0A397XUL6_BRACM; Uncharacterized protein
STRINGBo9g055890.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142991821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-65bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]