PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00073557001
Common NameGSBRNA2T00073557001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 223aa    MW: 25829.9 Da    PI: 6.528
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00073557001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.75.6e-2062115457
                          -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
             Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                          ++++++eq++ Le  F  ++++  e++ +LAk+lgL+ rqV vWFqNrRa++k+
  GSBRNA2T00073557001  62 KRKLSDEQVRMLEMSFGDEHKLESERKDRLAKELGLDPRQVAVWFQNRRARWKN 115
                          45899***********************************************95 PP
2HD-ZIP_I/II1231.5e-3961152293
          HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                          +kr+ls+eqv++LE+sF  e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE +y++Lk+a++++  e++rL++ev +L+e+l
  GSBRNA2T00073557001  61 RKRKLSDEQVRMLEMSFGDEHKLESERKDRLAKELGLDPRQVAVWFQNRRARWKNKRLEDEYTRLKNAHENVIVEKCRLDSEVLHLKEQL 150
                          8****************************************************************************************9 PP

          HD-ZIP_I/II  92 ke 93 
                          ++
  GSBRNA2T00073557001 151 HD 152
                          86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.8656116IPR001356Homeobox domain
SuperFamilySSF466894.6E-1859123IPR009057Homeodomain-like
SMARTSM003891.3E-1959120IPR001356Homeobox domain
CDDcd000863.88E-1761117No hitNo description
PfamPF000463.1E-1762115IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.2E-2063122IPR009057Homeodomain-like
PRINTSPR000311.2E-58796IPR000047Helix-turn-helix motif
PROSITE patternPS00027091114IPR017970Homeobox, conserved site
PRINTSPR000311.2E-596112IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MYNQNVHDHN LLFISQMYPS VYTSSIPQQG ESKPARPRRR RKSKSVAVAE VGGEGGNGWF  60
RKRKLSDEQV RMLEMSFGDE HKLESERKDR LAKELGLDPR QVAVWFQNRR ARWKNKRLED  120
EYTRLKNAHE NVIVEKCRLD SEVLHLKEQL HDAEREIQRL AQRVEGALSN SPISSSVSVE  180
ANQTMPFFGD YEVEVGDDGG GYENLFYSPE YIDGFEWMSP FM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13843RRRKSK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.47060.0flower| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00073557001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013701164.11e-165homeobox-leucine zipper protein ATHB-21-like isoform X2
SwissprotQ9ZU701e-124ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21
TrEMBLA0A078JRV31e-164A0A078JRV3_BRANA; BnaCnng58720D protein
STRINGBo9g025880.11e-164(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22082677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18550.12e-98homeobox protein 21
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]