PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00073811001
Common NameGSBRNA2T00073811001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 245aa    MW: 26968.9 Da    PI: 4.8423
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00073811001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.74.4e-13178223655
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++Er RR ri +++ +L+el+P+     +k  + a++Le+AveY+k Lq
  GSBRNA2T00073811001 178 SIAERVRRTRISDRIRRLQELVPNM----DKQTNTADMLEEAVEYVKALQ 223
                          689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.837172222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.46E-16175234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.13E-11176227No hitNo description
Gene3DG3DSA:4.10.280.108.1E-16177235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-10178223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-12178228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MQSSHGDGGE GGSGEGNRGG LSRIRSAPAT WIETLLVDDE EDDLKPNLCL TELLTGNSAR  60
DSFEFPSSAE QGLYQGGGFH RQNSTPADFL SGSGAGTDGY FSNFGIPANY DYLPPNVDIS  120
PASKRSREIE AQFSSQMKEE QMSGGVSGMM DINMDKLLED SVPCRVRAKR GCATHPRSIA  180
ERVRRTRISD RIRRLQELVP NMDKQTNTAD MLEEAVEYVK ALQSKIQELT EQQRRCICKP  240
KEEQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.87960.0seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00073811001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4117911e-173AF411791.1 Arabidopsis thaliana At1g35460/F12A4_2 mRNA, complete cds.
GenBankAY0937941e-173AY093794.1 Arabidopsis thaliana At1g35460/F12A4_2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013714967.10.0transcription factor bHLH80-like
SwissprotQ9C8P81e-137BH080_ARATH; Transcription factor bHLH80
TrEMBLA0A078HTG50.0A0A078HTG5_BRANA; BnaA08g06290D protein
TrEMBLA0A3P6C4B60.0A0A3P6C4B6_BRACM; Uncharacterized protein
STRINGBo8g026850.11e-162(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51042551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.11e-125bHLH family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]