PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00073890001
Common NameGSBRNA2T00073890001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GeBP
Protein Properties Length: 426aa    MW: 46752 Da    PI: 4.5685
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00073890001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573118.34.1e-37116215298
               DUF573   2 lfqrlwseeDeivlLqGlidf.kaktgk.spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqki 88 
                          lfqrlw++eDei lL+G++d+ ++++g  s++  d+  fye++k++++++++k+qlveK+rrLKkK+++ ++k++sgke+ f+++hdq++
  GSBRNA2T00073890001 116 LFQRLWTDEDEIELLRGFLDYvATHRGGnSSHPpDTAPFYEMIKSKLQLEFNKNQLVEKLRRLKKKYRNVMSKISSGKEVFFKSPHDQST 205
                          79*******************7666776355558******************************************************** PP

               DUF573  89 felskkiWgs 98 
                          fe+s+kiW++
  GSBRNA2T00073890001 206 FEISRKIWNQ 215
                          ********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.9E-33117214IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MTSDQRDVVF SLESPDLEEG AAGESDTDEN DDVAIPETNE EPEEDDPEEE DLTTAVTVSA  60
SSTDAVTVAL PAGSAVPVSV IPVDSSDPKW HRVTEIVHHL RPPPPPQPPI DDSRRLFQRL  120
WTDEDEIELL RGFLDYVATH RGGNSSHPPD TAPFYEMIKS KLQLEFNKNQ LVEKLRRLKK  180
KYRNVMSKIS SGKEVFFKSP HDQSTFEISR KIWNQTGKII GFEDNNAMDF EETNTNGNYF  240
NSPGSNPSNV EIDSENGVEK RLMMMSSSSG GSRKRSRSRI GKIEEDNKPV ITPSDVQTPN  300
AASNVNLNEP ATAVVGGNIG VLIEETVKNC VSPVIKEMMN GTTSMMMAAM GGGGGNGHGF  360
GSFSPVFTRP LGYGVEGGGG NKAVSDEQWR KQQILELEVY SRRLELVQEQ IRATLHELKT  420
MPSGV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1273278KRSRSR
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00073890001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013723588.10.0probable transcription factor At3g04930
SwissprotQ9CAV70.0STKLJ_ARATH; Probable transcription factor At3g04930
TrEMBLA0A078HTK50.0A0A078HTK5_BRANA; BnaC05g46940D protein
STRINGBra040416.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30982764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.11e-146DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]