PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00073907001
Common NameGSBRNA2T00073907001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 387aa    MW: 43977.6 Da    PI: 7.0192
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00073907001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.31.3e-11337384247
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                          + WT+eE+  l ++vk++G+  Wk I +  +     Rt+ ++k++w+++
  GSBRNA2T00073907001 337 KFWTPEEEAVLREGVKEYGKS-WKEIKNANPevfAERTEVDLKDKWRNL 384
                          67*****************88.************99***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.624331386IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.6E-13332386IPR009057Homeodomain-like
SuperFamilySSF466895.96E-13333385IPR009057Homeodomain-like
SMARTSM007175.6E-5335386IPR001005SANT/Myb domain
CDDcd116604.97E-15337386No hitNo description
PfamPF002496.0E-9339384IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MGVMDKWVAE FFIRRKKNPR VSPTNLLSAL KFRDSADDCS NNLKKASVLR DISDSLIRGN  60
VSEGTLDLLE TLEKLHQGSS VLTESHKSAY CWTAAECTVR LMWPLSASEG LYGDAVERIW  120
TKRIGVLKER GSGLVSEELL KWEADLRKAV EDDEVYKRIR ESNVRYSAVC FLNQLLEEQW  180
AVLGSCSLES FAQRMLLKRR KGADKGSRED PNAVDGDNRD VDGVECLEND EQHAAEGERT  240
MGAQEQEHEP SLDKGDKMVA QELKYYLLEI QRQLQEPNNA NITPPQPSRV NSTRKSGQQQ  300
DSASESRVRP HLPTPEPLNV SPLKKKRANP AARRIKKFWT PEEEAVLREG VKEYGKSWKE  360
IKNANPEVFA ERTEVDLKDK WRNLVR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00073907001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankS849688e-72S84968.1 Bcg4-4=acyl carrier protein [Brassica rapa, Genomic, 3898 nt].
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013750677.10.0uncharacterized protein BNAC05G46800D isoform X1
TrEMBLA0A078HX200.0A0A078HX20_BRANA; BnaC05g46800D protein
STRINGBo5g146770.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77201731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.21e-154MYB_related family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]