PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00073960001
Common NameGSBRNA2T00073960001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 96aa    MW: 10884.1 Da    PI: 8.9944
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00073960001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.43.8e-091258246
                         SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                         g+WT+   + + +a + +  +   +W+ +a+ +g g+t +++k ++  
  GSBRNA2T00073960001 12 GSWTAKQNKAFEQALATYDQDtpnRWHNVAQVVG-GKTTEEVKRHYEL 58
                         89*****************99*************.***********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.868964IPR017884SANT domain
SMARTSM007178.1E-91062IPR001005SANT/Myb domain
PfamPF002492.9E-71257IPR001005SANT/Myb domain
SuperFamilySSF466895.01E-131268IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-51366IPR009057Homeodomain-like
CDDcd001673.70E-71460No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MASSSVSSHS SGSWTAKQNK AFEQALATYD QDTPNRWHNV AQVVGGKTTE EVKRHYELLL  60
QDINSIENGL VPFPNYNTNG RLFQEEKRMR NMRLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-34695293RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00073960001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895211e-143AC189521.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB091M07, complete sequence.
GenBankAC1896351e-143AC189635.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS004J05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009107919.12e-66PREDICTED: protein RADIALIS-like 1
RefseqXP_013640791.12e-66protein RADIALIS-like 1
RefseqXP_013687135.12e-66protein RADIALIS-like 1
SwissprotF4JVB88e-51RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A078HZ161e-65A0A078HZ16_BRANA; BnaA01g05400D protein
STRINGBra011870.1-P3e-60(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.17e-52RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]