PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00074396001
Common NameGSBRNA2T00074396001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 238aa    MW: 26870.5 Da    PI: 5.1231
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00074396001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding521.6e-164080547
                         -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         + eE++l +d+++ +G++ W++Ia++++ gRt++++k++w+++
  GSBRNA2T00074396001 40 SHEEEQLVIDLHAHMGNK-WSKIASRLP-GRTDNEIKNHWNTH 80
                         89****************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-51431IPR009057Homeodomain-like
SuperFamilySSF466897.78E-211689IPR009057Homeodomain-like
PROSITE profilePS500904.0661730IPR017877Myb-like domain
PROSITE profilePS5129427.5723185IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-243286IPR009057Homeodomain-like
SMARTSM007171.6E-143583IPR001005SANT/Myb domain
PfamPF002497.2E-153980IPR001005SANT/Myb domain
CDDcd001673.68E-124081No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MGRQPCCDKL GLAGLRRCGK SCRLRWTNYI RPDLRRGLLS HEEEQLVIDL HAHMGNKWSK  60
IASRLPGRTD NEIKNHWNTH IKKKLVKMGI DPVTHQPLNQ DPNSTDNPKN SCSVSDDISM  120
VTKSSSTKNI ETNGTTTEDE SISTITDQNS SMDNDNHQLS NIYNDEEFFS YLWSDESTKA  180
ETPWSDSNYD VGGTLYHDNN VSCAGADFPI CSPERINGVD WTFQDYCQDF GVHDFGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-19178540108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00074396001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013627209.11e-171PREDICTED: protein ODORANT1-like isoform X1
RefseqXP_013701026.11e-171protein ODORANT1-like
TrEMBLA0A078HZJ61e-178A0A078HZJ6_BRANA; BnaC03g65090D protein
STRINGBo3g165540.11e-170(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22680.11e-116myb domain protein 85
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]