PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00074427001
Common NameGSBRNA2T00074427001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 335aa    MW: 37648.3 Da    PI: 8.4407
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00074427001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.26e-0858106254
                          HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          +  +  rE+ RR+++N+ f eL  +l +      +K++Ka+iL+ + + +k+L
  GSBRNA2T00074427001  58 KSQKAGREKLRREKLNEHFVELGNVLDPE----RPKNDKATILTDTLQLLKEL 106
                          5566779******************9987....69***********9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-1256122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.81756106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-1256128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.01E-557110No hitNo description
PfamPF000109.1E-658106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-562112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MYLIKLIWMM QSDQRAGLAR TNNQESFFVE PCLHLNRISP PPSPSILPAE FMDVSARKSQ  60
KAGREKLRRE KLNEHFVELG NVLDPERPKN DKATILTDTL QLLKELTSEV NKLKSEYTAL  120
TDESRELTQE KNDLREEKTS LKSDIENLNL QYQQRLRSMS PWGAAMDHTV MMAPPPSFPY  180
PMPMAMPPGS IPMHHPPMPS YTYFGNQNPS MMPAPYMPYM PPNTVVEQQS VHIPQNNRSR  240
EPRAKVSRES RSDKAEDSND VATQLELKTP GSTSDKDTSQ RPEKSKRCKR NSNNNNNSVE  300
ESSHSSKCSS SPSVRDNTSS SSVSGGGLKP DDAK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.273780.0seed| vegetative meristem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00074427001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3175070.0AK317507.1 Arabidopsis thaliana AT3G19860 mRNA, complete cds, clone: RAFL25-09-J11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013641091.10.0transcription factor bHLH121-like
SwissprotQ9LT231e-165BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A078HXZ00.0A0A078HXZ0_BRANA; BnaA01g25810D protein
STRINGAT3G19860.21e-164(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23532762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.21e-132bHLH family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  3. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]