PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00074491001

Common Name

GSBRNA2T00074491001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

SRS

Protein Properties

Length: 220aa MW: 24366.9 Da PI: 7.6786

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00074491001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	180.2	8.7e-56	63	204	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstkl 91 rs t+sCqdCGnqakk+C+h+RCRtCCks+g+dC thv+stW+paakrrerqqq ++++ +++ + + s l GSBRNA2T00074491001 63 RSATISCQDCGNQAKKGCTHMRCRTCCKSQGLDCPTHVRSTWIPAAKRRERQQQIETPTGNRNGRG-CGV----------GNIPKRSWDL 141 67899***********************************************999866554422.222..........2222334455 PP DUF702 92 ssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 + + + e++ + +Peevss+a frcvr+s+ ddge ++aYqt+v i+GhvfkGiLy qG+e+ GSBRNA2T00074491001 142 PDTLDSPEMDGTAFPEEVSSDAHFRCVRMSGTDDGESQFAYQTTVGIAGHVFKGILYSQGPES 204 5566666899999**********************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.2E-56	66	203	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	3.1E-27	68	110	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.0E-27	154	202	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MAGIGSSRNN EEDNQHKTNW LWYRNTVSSN TSHNNQQQIW QQQSLDLYPG KINVCDVTTS 60 SSRSATISCQ DCGNQAKKGC THMRCRTCCK SQGLDCPTHV RSTWIPAAKR RERQQQIETP 120 TGNRNGRGCG VGNIPKRSWD LPDTLDSPEM DGTAFPEEVS SDAHFRCVRM SGTDDGESQF 180 AYQTTVGIAG HVFKGILYSQ GPESMMMPGT QFHDNPSRS*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in cotyledon tips, leaf primordia, hydathodes, stipules, and lateral root primordia and weakly at the edges of petals and sepals. {ECO:0000269\|PubMed:21976484}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00074491001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009102280.1	1e-164	PREDICTED: protein SHI RELATED SEQUENCE 4 isoform X2
Refseq	XP_018508512.1	1e-164	PREDICTED: protein SHI RELATED SEQUENCE 4 isoform X2
Swissprot	Q9SI19	1e-105	SRS4_ARATH; Protein SHI RELATED SEQUENCE 4
TrEMBL	A0A078HWR4	1e-164	A0A078HWR4_BRANA; BnaC02g11580D protein
STRING	Bra039917.1-P	1e-163	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15117	15	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18120.1	1e-100	SHI-related sequence 4

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]