PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00074731001
Common NameGSBRNA2T00074731001, LOC106440692
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 609aa    MW: 69839 Da    PI: 4.8332
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00074731001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.00025579598221
                          EETTTTEEESSHHHHHHHHH CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                          +C  Cg+ F ++s L +Hi 
  GSBRNA2T00074731001 579 ECDRCGEEFESRSKLFKHIA 598
                          5*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1101.9E-22589IPR001623DnaJ domain
SuperFamilySSF465653.53E-226111IPR001623DnaJ domain
SMARTSM002716.8E-191073IPR001623DnaJ domain
PROSITE profilePS5007618.5771181IPR001623DnaJ domain
CDDcd062571.44E-141170IPR001623DnaJ domain
PfamPF002263.1E-191278IPR001623DnaJ domain
PRINTSPR006252.8E-131331IPR001623DnaJ domain
PRINTSPR006252.8E-133146IPR001623DnaJ domain
PRINTSPR006252.8E-135373IPR001623DnaJ domain
PROSITE patternPS0063605877IPR018253DnaJ domain, conserved site
SuperFamilySSF576678.14E-15300350No hitNo description
SMARTSM004515.9E-8305339IPR003604Zinc finger, U1-type
PfamPF121713.4E-10307333IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.82308332IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280310332IPR007087Zinc finger, C2H2
PROSITE profilePS501579.702578607IPR007087Zinc finger, C2H2
SMARTSM003553.6578602IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280580602IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MASSSRSEKR CLYEILDVSK ESSPEEIRSS YRRLALQRHP DKLIKAGGIS EADATAQFQE  60
LVHAYEVLSD PKERAWYDSH RSQILFADQG SAGGSKSGGM PGGSVPDLFA FFSTSVYSGY  120
SDTCKGFYKV YFDVFNSVYL NEIKFARTLG LSMDSVREAP IMGNLESPYS QVTAFYNYWL  180
GFSTVMDFCW VDEYDTMAGP NRRMRRKMEE ENKKVRKKAK REYNETVRGL AAFVKKRDKR  240
VVDMMVKKSA EMELKKAEER ERKKKMEKER LERAMNYEEP DWAKAQGEEE EEVEEDGGDD  300
GKKKSEQLYC IVCSKKFKSE KQWKNHEQSK KHKEKVAELR ESFSDVEEEE EEIDEIPETV  360
EELEELNMED EVVGEADETD DEYFMAEEDV KGSSESEDED GDVDDDELIL LKKMVEKNKR  420
KNVVSREEDE VHVEIESDSE FDNQKSTTGR NRKGKKERNK RNAGKDITDD ANKTQISMDD  480
GDNSDDNADA TESASGAVEE SQKDEAEPME YDNRKSTGRR RRSKKGKDKS SEADDTQKAM  540
EETHEDRSEY IEHKKAPRSK KSTRGMKSKG TSKKASNNEC DRCGEEFESR SKLFKHIADT  600
GHATVKSR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1212220KKVRKKAKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.273180.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00074731001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013737876.10.0DNAJ protein JJJ1 homolog
RefseqXP_022556677.10.0DNAJ protein JJJ1 homolog
SwissprotQ9C9110.0JJJ1_ARATH; DNAJ protein JJJ1 homolog
TrEMBLA0A078HYL50.0A0A078HYL5_BRANA; BnaC02g22840D protein
STRINGBo2g081060.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM88692230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.10.0DNAJ heat shock N-terminal domain-containing protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]