PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00074800001
Common NameGSBRNA2T00074800001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 321aa    MW: 36919.8 Da    PI: 6.4301
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00074800001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.39.8e-12152200152
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 
                          +r +h  +Er+RR+++N+  + Lr+llP++   + ++ + a+i+  A++Y k
  GSBRNA2T00074800001 152 QRISHIVVERNRRRQMNEHVNSLRSLLPPS---YIQRGDQASIVGGAINYAK 200
                          699***************************...9****************66 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.14E-9150207No hitNo description
PROSITE profilePS5088814.945151202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-15151219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.8E-9152201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-12153216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-7157208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MESFQGHINP CYLDRKADAR SLEVQEFAEA QSFSFKEEED QDTVPFLQML QSEEPSFLRL  60
LSLQNLKEPW EVESFLSQEG YPHLYQNQVS ASYMEGAKQP LSSQEADMIL LPSSSPQHKR  120
KNSDLLAPDM TREKRKRRKT KPSKNIEEIE SQRISHIVVE RNRRRQMNEH VNSLRSLLPP  180
SYIQRGDQAS IVGGAINYAK VLEQIIQSLE SQKKTQQSSE VENRVQEDET CVPSIETTVI  240
QNHVNLRVVC RKRQGGLIRG IISLEKLRLT VLHLNISTLS HFYVSYCFNL KMEDGCELES  300
ADEIKKVAHQ IFDMPMNLNN *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118138KRKNSDLLAPDMTREKRKRRK
2133138KRKRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.241040.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00074800001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022573551.10.0transcription factor bHLH67-like
SwissprotQ700E41e-131BH067_ARATH; Transcription factor bHLH67
TrEMBLA0A078JLU30.0A0A078JLU3_BRANA; BnaA04g27520D protein
STRINGXP_006292401.11e-140(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31192666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61950.11e-133bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Yu H,Murchie EH,González-Carranza ZH,Pyke KA,Roberts JA
    Decreased photosynthesis in the erect panicle 3 (ep3) mutant of rice is associated with reduced stomatal conductance and attenuated guard cell development.
    J. Exp. Bot., 2015. 66(5): p. 1543-52
    [PMID:25582452]