PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00075065001

Common Name

GSBRNA2T00075065001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB

Protein Properties

Length: 330aa MW: 37932.3 Da PI: 7.29

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00075065001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.4	3e-17	120	165	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g+W + Ed l ++v+++G+++Wk+Ia+++g +R +kqc++rw+++l GSBRNA2T00075065001 120 GAWDQSEDTNLRKLVELYGTKNWKKIANMLG-TRIGKQCRERWHNHL 165 89***************************.***********97 PP
2	Myb_DNA-binding	51.6	2.1e-16	171	213	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eEd +lv+a+k +G+ W++Ia ++ gRt++ +k+rw+ GSBRNA2T00075065001 171 KSAWTEEEDRILVEAHKVFGNQ-WAKIALKLC-GRTENAIKNRWN 213 579***************99.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	26.277	114	169	IPR017930	Myb domain
SuperFamily	SSF46689	7.86E-28	118	212	IPR009057	Homeodomain-like
SMART	SM00717	5.6E-15	118	167	IPR001005	SANT/Myb domain
Pfam	PF00249	4.3E-17	119	165	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-23	120	172	IPR009057	Homeodomain-like
CDD	cd00167	1.02E-14	121	165	No hit	No description
PROSITE profile	PS51294	20.627	170	220	IPR017930	Myb domain
SMART	SM00717	2.2E-16	170	218	IPR001005	SANT/Myb domain
Pfam	PF00249	1.7E-14	171	213	IPR001005	SANT/Myb domain
CDD	cd00167	1.07E-12	173	213	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.1E-19	173	218	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MDYSFNIFNK NFTRNETESS LTNDNLAYLQ KDHIDCFNDN LGQSSVNGWS NSSIMTSNSV 60 SNPQSLMSVM PNQNYNHFGR SFVCTQNLPT FNSPITEIPP RYPFIDIDLS ATTKGNFNTG 120 AWDQSEDTNL RKLVELYGTK NWKKIANMLG TRIGKQCRER WHNHLRHGIK KSAWTEEEDR 180 ILVEAHKVFG NQWAKIALKL CGRTENAIKN RWNGTKRRMH QKRMKRSDKN ANPPQNVILA 240 RYIRHVTNKN ESPNTKETDC TKDDKHENAF DGEMDLSLDV TTQTTEPLAS MSTTSSYVPE 300 PATTFSWDDY FTYICESMDD IHMLMQGLD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	4e-36	120	218	8	106	B-MYB
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	215	225	KRRMHQKRMKR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00075065001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013745691.2	0.0	transcription factor MYB115-like
TrEMBL	A0A078HY01	0.0	A0A078HY01_BRANA; BnaA04g10420D protein
STRING	Bra025564.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13303	14	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G40360.1	6e-56	myb domain protein 115

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]