PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00075083001
Common NameGSBRNA2T00075083001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 261aa    MW: 30064.6 Da    PI: 8.3264
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00075083001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding537.8e-1766111248
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          g+W + Ed  l ++v+++G+++Wk Ia+++g +R +kqc++rw+++l
  GSBRNA2T00075083001  66 GAWDQSEDTNLRKLVELYGTKNWKNIANMLG-TRIGKQCRERWHNHL 111
                          89*****************************.*************97 PP
2Myb_DNA-binding53.27.1e-17117161147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          + +WT+eEd +lv+a+k +G++ W++Ia ++  gRt+k +k+rw+ +
  GSBRNA2T00075083001 117 KSAWTEEEDRILVEAHKVFGNK-WAKIALKLC-GRTEKAIKNRWNGL 161
                          579*******************.*********.***********965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.75660115IPR017930Myb domain
SMARTSM007171.4E-1464113IPR001005SANT/Myb domain
SuperFamilySSF466891.76E-2764158IPR009057Homeodomain-like
PfamPF002491.1E-1665111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-2466119IPR009057Homeodomain-like
CDDcd001671.44E-1467111No hitNo description
PROSITE profilePS5129420.983116166IPR017930Myb domain
SMARTSM007172.4E-16116164IPR001005SANT/Myb domain
PfamPF002495.1E-15117160IPR001005SANT/Myb domain
CDDcd001672.87E-13119162No hitNo description
Gene3DG3DSA:1.10.10.609.7E-20120164IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MTSNSDSNHQ SLMSVMPNQN YNHSGRTFGC TQNLPTFNSL ITDIPPRYPF IDIDLPASTK  60
GNFNTGAWDQ SEDTNLRKLV ELYGTKNWKN IANMLGTRIG KQCRERWHNH LRHDIKKSAW  120
TEEEDRILVE AHKVFGNKWA KIALKLCGRT EKAIKNRWNG LKRRMHQKRM NQSDKNANPP  180
QNVFLARYIR HVTNENESPN TKETDCTKDD DHENAFDGEM DLSLDVTTQT TKPLASMSTT  240
SSYVPEPAMT FSWDDYFTYI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-35661658108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00075083001
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013745691.21e-180transcription factor MYB115-like
TrEMBLA0A078I0K00.0A0A078I0K0_BRANA; BnaA04g10300D protein
STRINGBra025574.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133031427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25230.11e-51myb domain protein 100
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]