PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00075084001

Common Name

GSBRNA2T00075084001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB

Protein Properties

Length: 276aa MW: 31816.7 Da PI: 7.887

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00075084001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.7	2.3e-17	66	111	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g+W + Ed l ++v+++G+++Wk+Ia+++g +R +kqc++rw+++l GSBRNA2T00075084001 66 GAWDQSEDTNLRKLVELYGTKNWKKIANMLG-TRIGKQCRERWHNHL 111 89***************************.***********97 PP
2	Myb_DNA-binding	52	1.6e-16	117	159	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eEd +lv+a+k +G+ W++Ia ++ gRt++ +k+rw+ GSBRNA2T00075084001 117 KSAWTEEEDRILVEAHKVFGNQ-WAKIALKLC-GRTENAIKNRWN 159 579***************99.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	25.656	60	115	IPR017930	Myb domain
SMART	SM00717	5.6E-15	64	113	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	5.62E-28	64	158	IPR009057	Homeodomain-like
Pfam	PF00249	3.3E-17	65	111	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	9.2E-24	66	118	IPR009057	Homeodomain-like
CDD	cd00167	9.12E-15	67	111	No hit	No description
SMART	SM00717	2.2E-16	116	164	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	20.627	116	166	IPR017930	Myb domain
Pfam	PF00249	1.3E-14	117	159	IPR001005	SANT/Myb domain
CDD	cd00167	1.10E-12	119	159	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.0E-19	119	164	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MTSNHDSNHQ SLMSVMPNQN YNHFGRSFAC TQNLPTFNSL ITEIPPRYPF IDIDLPASTE 60 GNFNTGAWDQ SEDTNLRKLV ELYGTKNWKK IANMLGTRIG KQCRERWHNH LRHGIKKSAW 120 TEEEDRILVE AHKVFGNQWA KIALKLCGRT ENAIKNRWNG TKRRMHQKRM KRSDKNANPP 180 QNVILARYIR HVTNKNESPN TKETDCTKDD KHENAFDGEM DLSLDVTTQT REPLASMSTT 240 SCSVPEPATT FSWDDYFTYI CESMDDIQML MQGLD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-36	66	164	8	106	B-MYB
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	161	171	KRRMHQKRMKR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00075084001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013745691.2	0.0	transcription factor MYB115-like
TrEMBL	A0A078HZ43	0.0	A0A078HZ43_BRANA; BnaA04g10290D protein
STRING	Bra025575.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13303	14	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G40360.1	1e-55	myb domain protein 115

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]