PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00075174001
Common NameGSBRNA2T00075174001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 412aa    MW: 46520 Da    PI: 8.5695
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00075174001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.61.7e-143484248
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqkyl 48
                         + W t+E++ll +avk++G+++W+++a+++g    +  ++ +c++++q+++
  GSBRNA2T00075174001 34 QVWGTWEELLLTCAVKRHGSKDWDSVAKEVGsrssLDASGTSCRLKYQDLK 84
                         68**********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.43E-73287IPR009057Homeodomain-like
SMARTSM007172.0E-83286IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-53486IPR009057Homeodomain-like
PfamPF002492.7E-133484IPR001005SANT/Myb domain
PROSITE profilePS500906.333684IPR017877Myb-like domain
CDDcd001679.56E-83684No hitNo description
SuperFamilySSF473701.44E-8261325IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.7E-8263325IPR001487Bromodomain
CDDcd043692.05E-6272324No hitNo description
PfamPF004399.4E-5274324IPR001487Bromodomain
PROSITE profilePS500149.366280333IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MNDDYTTNIH SCSDSDNKRN GDGNGNGNQY QISQVWGTWE ELLLTCAVKR HGSKDWDSVA  60
KEVGSRSSLD ASGTSCRLKY QDLKRRFQDS VDDDGRGNNE AVAEDEEDTD GEIPWLEQLR  120
SLRVAELRRD VQRCDESILS LQLKVKKLEE ENDGHDGDDR PDLVEDGSKA VRSINDETEP  180
TRLNRETSNS TASVGKIADH ERLSGDNSKN PDPDHMAATE EEEGTISRRS GMSQSVELGE  240
SGTSTVNRKR KGHEYMSGED NIKPDGNQSQ PLIEIIKLIR SHPRGSVFAS RLRSQETKDY  300
KRVIRQHLDI KTIEKKMEKG SYVSSRKETT SKDQKKSDGN VKKDNRKAKP RELRSNSTGK  360
KKVEVESTEN KRSSKRKQLK KEAEEETATA TRKRGRESGK DNQQPKKRNK R*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1370377KRSSKRKQ
2404410PKKRNKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00075174001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013637174.10.0PREDICTED: uncharacterized protein LOC106342710 isoform X1
RefseqXP_013637175.10.0PREDICTED: uncharacterized protein LOC106342710 isoform X1
TrEMBLA0A078I0Q00.0A0A078I0Q0_BRANA; BnaC04g22430D protein
STRINGBo4g106310.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41231947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60110.11e-131DNA-binding bromodomain-containing protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]