PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00075207001

Common Name

GSBRNA2T00075207001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

BBR-BPC

Protein Properties

Length: 321aa MW: 36263.7 Da PI: 9.6378

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00075207001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	352.3	1.1e-107	1	320	1	301
GAGA_bind 1 mdddgsre..rnkg.yye....paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnklla 83 mdd g+r+ r+k+ + + ++++ ++ +q+ms+iaerda+i+ernla+se+k+avaerdmaflqrd+a+aern+a++erd++l+a GSBRNA2T00075207001 1 MDDGGHRDngRHKApQGQwmmqQQQQQQQPSMKQVMSIIAERDAAIQERNLAISERKSAVAERDMAFLQRDTAIAERNNAIMERDSALTA 90 999999888888765322445433455555667******************************************************* PP GAGA_bind 84 lllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksek 173 l++++ns+a++ q ++ ++ +++q ++ ql+++a+e+re+e +++p ++ +a e++k+k++ +k k +ka +++k+++k GSBRNA2T00075207001 91 LQYRDNSMATSR----QHQPHMHHQHQHQ-HHMLQLTENAYETRETE--TSPP---TTGSALESAKPKRG---RKLKDPKAAAANKRGPK 167 **966554....4444444443332.34499***98888..4555...45677888888855...55555566667777888 PP GAGA_bind 174 skkkvkkesader......................skaekksidl..vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCttti 239 +++kvkke++d+ sk+++ks ++ +ln+v +De+t+P+PvCsCtG+lrqCYkWGnGGWqS+CCttt+ GSBRNA2T00075207001 168 TQRKVKKENEDDLskimfvktttldyseeeeeatgSKSDWKSREMvvGLNQVVYDETTMPPPVCSCTGVLRQCYKWGNGGWQSSCCTTTL 257 8999999998733589************************96669************************************* PP GAGA_bind 240 SvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeG.ydlsnpvDLkdhWAkHGtnkfvtir 301 S++PLP+ +++++aR++grKmS++af+k L++LaaeG +dls vDLkdhWAkHGtn+++ti+ GSBRNA2T00075207001 258 SMHPLPALPNKKHARVGGRKMSGSAFNKYLSRLAAEGhHDLSSHVDLKDHWAKHGTNRYITIK 320 *********************************88*********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	3.8E-141	1	320	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	1.0E-97	1	320	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MDDGGHRDNG RHKAPQGQWM MQQQQQQQQP SMKQVMSIIA ERDAAIQERN LAISERKSAV 60 AERDMAFLQR DTAIAERNNA IMERDSALTA LQYRDNSMAT SRQHQPHMHH QHQHQHHMLQ 120 LTENAYETRE TETSPPTTGS ALESAKPKRG RKLKDPKAAA ANKRGPKTQR KVKKENEDDL 180 SKIMFVKTTT LDYSEEEEEA TGSKSDWKSR EMVVGLNQVV YDETTMPPPV CSCTGVLRQC 240 YKWGNGGWQS SCCTTTLSMH PLPALPNKKH ARVGGRKMSG SAFNKYLSRL AAEGHHDLSS 300 HVDLKDHWAK HGTNRYITIK *

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269\|PubMed:14731261, ECO:0000269\|PubMed:21435046}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00075207001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022568969.1	0.0	protein BASIC PENTACYSTEINE6-like
Refseq	XP_022568970.1	0.0	protein BASIC PENTACYSTEINE6-like
Refseq	XP_022568971.1	0.0	protein BASIC PENTACYSTEINE6-like
Refseq	XP_022568972.1	0.0	protein BASIC PENTACYSTEINE6-like
Refseq	XP_022568973.1	0.0	protein BASIC PENTACYSTEINE6-like
Swissprot	Q8L999	1e-175	BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBL	A0A078I0R5	0.0	A0A078I0R5_BRANA; BnaC04g22230D protein
STRING	Bra014504.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6169	26	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42520.2	1e-156	basic pentacysteine 6

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]