PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00075231001

Common Name

GSBRNA2T00075231001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

GRAS

Protein Properties

Length: 212aa MW: 23569.1 Da PI: 4.3449

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00075231001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	55.8	9.1e-18	2	128	173	302
GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerfle 259 + f+++++++k++e+l+++ +r+ gE +V ++ ++ r l + + e+++ + +sP+vvv+v +e +d+ +s sF ++f++ GSBRNA2T00075231001 2 KFFFQIEFVLMKTFEMLSFKPIRFVDGERSVVLISPAIIRSL-------NGIAEFVNNLGIVSPNVVVFVVREgcTDTaGSCSFQREFVS 84 5679**********************************99.......44667*************99654556777**** PP GRAS 260 aleyysalfdsl.eaklpreseerikvErellgreivnvvaceg 302 a+e+y+++++sl +a +p+ + ++ vE+++l+++i +v ++ GSBRNA2T00075231001 85 AFEFYTMVMESLdAAAAPPGDLVKKIVEAFVLRPKILTAVETAA 128 ********888899999***************998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	3.1E-15	2	128	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MKFFFQIEFV LMKTFEMLSF KPIRFVDGER SVVLISPAII RSLNGIAEFV NNLGIVSPNV 60 VVFVVREGCT DTAGSCSFQR EFVSAFEFYT MVMESLDAAA APPGDLVKKI VEAFVLRPKI 120 LTAVETAADS QGGDGLSRQL PVRNMRLLDV EEGFPITHTY EDLSRLYLGY EMSKVSVADI 180 SPDEEDIMAL PVQAFVYLKR AMDFHGNDED N*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.2339	1e-136	microspore

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and flowers. {ECO:0000269\|PubMed:18500650}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00075231001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY664405	1e-133	AY664405.1 Brassica napus SCARECROW-like protein (SCL1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001303178.1	8e-63	HVA22-like protein k
Refseq	XP_013593036.1	8e-63	PREDICTED: scarecrow-like protein 15
Refseq	XP_022561077.1	8e-63	HVA22-like protein k isoform X1
Swissprot	O23210	2e-59	SCL15_ARATH; Scarecrow-like protein 15
TrEMBL	A0A078HXV2	1e-152	A0A078HXV2_BRANA; BnaA03g53550D protein
TrEMBL	A0A3P6AAE3	1e-152	A0A3P6AAE3_BRACM; Uncharacterized protein
STRING	Bra017775.1-P	1e-152	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36710.1	7e-62	GRAS family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]