PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00075344001
Common NameGSBRNA2T00075344001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CPP
Protein Properties Length: 658aa    MW: 71952.5 Da    PI: 5.4506
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00075344001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.63.7e-16370408240
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          ++k+CnCkkskClk+YCeCfaag++C e C+C dC+Nk 
  GSBRNA2T00075344001 370 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCIDCFNKP 408
                          689**********************************96 PP
2TCR52.69.2e-17455493139
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                          ++k+gCnCkks+ClkkYCeCf+ g+ Cs +C+Ce+CkN 
  GSBRNA2T00075344001 455 RHKRGCNCKKSNCLKKYCECFQGGVGCSINCRCEGCKNA 493
                          589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.3E-19369410IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.245370495IPR005172CRC domain
PfamPF036386.3E-12372407IPR005172CRC domain
SMARTSM011142.1E-17455496IPR033467Tesmin/TSO1-like CXC domain
PfamPF036383.9E-12457493IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MDTPQKSITQ IETPVSKSRV EDSPVFNYIN SLSPIRPVKS IPNPHQFSAL NFTSPPSVFT  60
SPHLTSSHKE SRFFKTHHPS PDPTIPVQES PDDSTSNEGA AAEAEVTPNF NIDASTEMEQ  120
PHIAKETNLD DLPLAVSPCG RETTGDLSLV PYASPPREEN GEDDTGMEMY GNVQGKNETP  180
DWDRLIADSS EFLIFSSPND SEAFRCLMMQ RASPSQAPSV MMPTMQPGSI NEPESSIASP  240
YGAVSVLHRG IRRRCLDFEM PGNKQTSSEN NTSACGSSSR CVVPSIGLHL NALLMSTKDC  300
KTNNTTHDYS CSEKYQVGLQ GSSSTLQETL DQTETETRDL EDVPVEPTLE ELHLSSPKKK  360
RQLEAGEGES CKRCNCKKSK CLKLYCECFA AGVYCIEPCS CIDCFNKPIH EDTVLATRKQ  420
IESRNPLAFA PKVIKSSDLV LETGDDASKT PASARHKRGC NCKKSNCLKK YCECFQGGVG  480
CSINCRCEGC KNAFGRKDGS AIVDMEAEQE EENETSGKNR RAKTQENSEV YLMRKEESSA  540
LPATPMSVYR QQLVQLKNMM PPPQSVLGVG SSSSGMFNSQ YTRKLEMKSL ETVAEDGAEE  600
MPEILSHSSI DNVNAVSPNG KRVSPPHLDS SSSGRRSGGR KLILQSIPTF PSLTPQH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-1637449214120Protein lin-54 homolog
5fd3_B1e-1637449214120Protein lin-54 homolog
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed at the late stage of pollen development in tricellular and mature pollen. {ECO:0000269|PubMed:18057042}.
UniprotTISSUE SPECIFICITY: Ubiquitous but expressed mostly in all the aerial organs with highest expression in flowers. {ECO:0000269|PubMed:10769245, ECO:0000269|PubMed:18057042}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00075344001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1615397e-92AL161539.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 39.
GenBankCP0026877e-92CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankZ973377e-92Z97337.2 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013601979.10.0PREDICTED: protein tesmin/TSO1-like CXC 2
RefseqXP_013668469.10.0protein tesmin/TSO1-like CXC 2
SwissprotF4JIF50.0TCX2_ARATH; Protein tesmin/TSO1-like CXC 2
TrEMBLA0A078HWC50.0A0A078HWC5_BRANA; BnaC01g22810D protein
STRINGBo1g057470.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14672891
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.10.0TESMIN/TSO1-like CXC 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]