PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00075475001

Common Name

GSBRNA2T00075475001, LOC106385831

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 204aa MW: 22519.3 Da PI: 7.9248

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00075475001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.4	9.6e-12	137	182	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri ++ +L+el+P+ k s a++L +Ave+Ik Lq GSBRNA2T00075475001 137 SIAERERRTRISGKLKKLQELVPNM----EKQTSYADMLDLAVEHIKGLQ 182 689*******************7....477***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.973	131	181	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.84E-14	134	195	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.44E-10	135	186	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.7E-12	136	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.0E-9	137	182	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.5E-11	137	187	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MEEGTGFPQG RPNGKYGGGG ERVPSRLKSE LRFSGGGSSG HQEHNSEVEA PLAAINCVAS 60 TSMSFGNDHN NWDNSSSQIS FTIDEPGKRS KTTDFFTLET QFSMPQTSME MSMINIPEDS 120 VPWKVRAKRG CATHPRSIAE RERRTRISGK LKKLQELVPN MEKQTSYADM LDLAVEHIKG 180 LQHHIESLEK GMERCTCGAC KKQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00075475001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013681187.1	1e-152	transcription factor bHLH129
Swissprot	Q9ZW81	2e-86	BH129_ARATH; Transcription factor bHLH129
TrEMBL	A0A078HWE3	1e-151	A0A078HWE3_BRANA; BnaC03g24060D protein
STRING	Bo3g036400.1	1e-149	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10329	18	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43140.2	1e-102	bHLH family protein

Link Out ? help Back to Top
Entrez Gene	106385831

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]