PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00075565001
Common NameGSBRNA2T00075565001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 306aa    MW: 33606.1 Da    PI: 9.9883
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00075565001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.71.1e-12101146247
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          ++WT+eE+  ++ + k+ G+g+W+ I++ + ++Rt+ q+ s+ qky
  GSBRNA2T00075565001 101 NPWTEEEHRMFLVGLKRVGKGDWRGISKSFVTTRTPTQVASHAQKY 146
                          69*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.73895151IPR017930Myb domain
SuperFamilySSF466896.73E-1797151IPR009057Homeodomain-like
TIGRFAMsTIGR015576.1E-1698149IPR006447Myb domain, plants
SMARTSM007174.7E-1099149IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-1099145IPR009057Homeodomain-like
PfamPF002491.1E-10101146IPR001005SANT/Myb domain
CDDcd001671.04E-8102147No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MATTAKTCSL CGNNGHNAPT CCLNIVNKGS VKLFGVDISS DPINSPEVTA LRKSLSLGNL  60
DSLLHNGNGD LIAAVEDTGY HSDGQIHSKK RRSSHEKKKG NPWTEEEHRM FLVGLKRVGK  120
GDWRGISKSF VTTRTPTQVA SHAQKYFLRL NGNDKRKRRA SLFDISLEDQ KEKEKNFPDA  180
STSSSKTPSK QLITGSQKPV QVQTQTEISN RFQNLSMGYM PIYNFSPFMF HPMYYPNPGP  240
IRYVHPSGIP VPRHVPVSMP QPHLNEVSDM TTKDGLELAI GLPPPPPPQA TGSTDLTAHG  300
TIHVK*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00075565001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130166.10.0PREDICTED: transcription factor MYB1R1-like
SwissprotQ9FKF91e-157M5162_ARATH; Probable transcription factor At5g61620
TrEMBLA0A078I1990.0A0A078I199_BRANA; BnaAnng06930D protein
STRINGBra029320.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60212747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.11e-149MYB_related family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]