PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00075571001
Common NameGSBRNA2T00075571001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 250aa    MW: 27604.4 Da    PI: 4.7665
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00075571001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.00019318621
                         TTEEESSHHHHHHHHH CS
              zf-C2H2  6 CgksFsrksnLkrHir 21
                         C+ksFs+ s+L+ H++
  GSBRNA2T00075571001  3 CNKSFSNGSTLREHMM 18
                         ***************7 PP
2zf-C2H210.70.0016174196123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C  Cgk+F +   L  H  +H
  GSBRNA2T00075571001 174 FICDVCGKVFGSYQALGGHRTSH 196
                          89********9999998888777 PP
3zf-C2H214.97.8e-05225247123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C+ Cg+ F +   L  H++tH
  GSBRNA2T00075571001 225 HQCGVCGREFESGQALGGHMKTH 247
                          79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.48E-8172247No hitNo description
PfamPF139126.1E-12174197IPR007087Zinc finger, C2H2
SMARTSM003550.044174196IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.408174201IPR007087Zinc finger, C2H2
PROSITE patternPS000280176196IPR007087Zinc finger, C2H2
PfamPF139121.3E-10224248IPR007087Zinc finger, C2H2
SMARTSM003550.021225247IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.138225249IPR007087Zinc finger, C2H2
PROSITE patternPS000280227247IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MSCNKSFSNG STLREHMMSE SASGSTLPSL ETSNNETVLI GGPDLKREDG AHQIKGERKM  60
IVDEADSTGS GSPLTAVEEA GLILVALSKG QRPENSQNWN AIDRLLATPN GKEEYYETDL  120
DSDDDNKEVK YKSVAELLTQ NVETLTEDNG EDDEDNDADE TNLVTREKKC KKEFICDVCG  180
KVFGSYQALG GHRTSHKCKR LKICDKNDQD RELVPNKKND QDRRHQCGVC GREFESGQAL  240
GGHMKTHYI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00075571001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325420.0AC232542.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH005L20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013649110.11e-172zinc finger protein ZAT1-like
RefseqXP_013674494.11e-172zinc finger protein ZAT1-like
TrEMBLA0A078I1A70.0A0A078I1A7_BRANA; BnaAnng06980D protein
STRINGBra029315.1-P1e-172(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141711523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61470.15e-31C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]