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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
GSBRNA2T00075747001 |
| Common Name | GSBRNA2T00075747001, LOC106425457, LOC106437465 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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| Family |
GRAS |
| Protein Properties |
Length: 536aa MW: 59196.3 Da PI: 6.3671 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GSBRNA2T00075747001 | genome | Genoscope | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 402.5 | 4.1e-123 | 158 | 528 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90
l+e+L+e+A+avs+gd+++a ++ l++++s +g+p+qRl +y++e+L+arl++++ ++y+al+++e + e ++++ +++e++P+
GSBRNA2T00075747001 158 LKEVLVEAAQAVSEGDFAAACGFIDVLEQMVSVSGTPIQRLGTYMAEGLRARLQGTGGNIYRALKCNEPT---GRELMSYMGVLYEICPY 244
5789*****************************************************************9...99999999********* PP
GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
kf++ +aN aIleav+ge+rvHiiDf+i qG+Q++ L+++La+ p+gpp lR+Tgv++++s + l+ +ge+La+ A+++gvpfef
GSBRNA2T00075747001 245 WKFAYTAANAAILEAVAGEKRVHIIDFQIAQGTQYMFLINELAKLPGGPPLLRVTGVDDSQSRfaRGGGLNLVGEKLANKAQSCGVPFEF 334
***********************************************************99989999*********************** PP
GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
+ + + +++ e+L v+pg a++Vn+ + lh+++desvs+e++rd++L+l+ksl Pk+v++veqe+++n+++Fl rf+e+l+yy+a+f
GSBRNA2T00075747001 335 HD-AIMSGCKVHREHLGVEPGFAVVVNFPYVLHHMPDESVSVENHRDRLLHLIKSLGPKLVTLVEQESNTNTSPFLSRFVETLDYYTAMF 423
**.788899999****************************************************************************** PP
GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
+s++a pr++++ri+ E+++++r+ivn++ace+aer+erhe l+kWr r+++aGF p+s++aa a+ +l+ ++++ y++ e++g+l
GSBRNA2T00075747001 424 ESIDAARPRDDKQRISAEQHCVARDIVNMIACEEAERVERHEVLGKWRVRMMMAGFMGWPVSSSAAFAASEMLKGYDKN-YKLGESEGAL 512
*****************************************************************************66.********** PP
GRAS 359 vlgWkdrpLvsvSaWr 374
+l Wk+rp+ ++SaW+
GSBRNA2T00075747001 513 YLFWKRRPMATCSAWK 528
***************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 536 aa
Download sequence Send
to blast |
MQTSQKHHSA AGLHMLYPQV HCSPQFQVID KKNKKNAFSD TTPSKESFFT LESSTASGPL 60
PSYESPSVSI TSGRSPFSPQ ASCISDLHPS PENIYESPLS GASSHVYDEA HVKNKIRELE 120
VSLLSVDPKV EEYSGFSPAA GKSWNWDELL ALTPQLDLKE VLVEAAQAVS EGDFAAACGF 180
IDVLEQMVSV SGTPIQRLGT YMAEGLRARL QGTGGNIYRA LKCNEPTGRE LMSYMGVLYE 240
ICPYWKFAYT AANAAILEAV AGEKRVHIID FQIAQGTQYM FLINELAKLP GGPPLLRVTG 300
VDDSQSRFAR GGGLNLVGEK LANKAQSCGV PFEFHDAIMS GCKVHREHLG VEPGFAVVVN 360
FPYVLHHMPD ESVSVENHRD RLLHLIKSLG PKLVTLVEQE SNTNTSPFLS RFVETLDYYT 420
AMFESIDAAR PRDDKQRISA EQHCVARDIV NMIACEEAER VERHEVLGKW RVRMMMAGFM 480
GWPVSSSAAF AASEMLKGYD KNYKLGESEG ALYLFWKRRP MATCSAWKPN PNQIV*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: During development, higher expression levels are detected in young rosette leaves, senescing leaves and petals and sepals at flower stage 15. {ECO:0000269|PubMed:16680434}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots, hypocotyls, cotyledons, shoot apex, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:16680434, ECO:0000269|PubMed:18500650}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC232568 | 0.0 | AC232568.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH122A22, complete sequence. |
