PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00076141001
Common NameGSBRNA2T00076141001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 245aa    MW: 28641.9 Da    PI: 7.6637
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00076141001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF732.5e-231059251
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         + ++k  rqvtf+kR++ ++KKA ELSvLCd+ + +iifs+t+kly ++s
  GSBRNA2T00076141001 10 KLDDKVERQVTFAKRKKSLMKKARELSVLCDVPIVLIIFSQTDKLYSFCS 59
                         56899*******************************************96 PP
2K-box31.76.7e-12941581881
                K-box  18 qqelakLkkeienLqreqRhll..GedLesLslkeLqqLeqqLekslkkiRskKnellleqieelq 81 
                          ++  + + +eienL+ +  +l   G +L+ L++ +L + e qLe+sl++ R++K el+++q ++ +
  GSBRNA2T00076141001  94 EETKESMMREIENLKMN-LQLYggGHGLNLLTYDDLLRFELQLESSLQNARARKFELMHQQQQKGR 158
                          344568999******87.444412689*********************************988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.3E-28160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.231161IPR002100Transcription factor, MADS-box
CDDcd002658.54E-33279No hitNo description
PRINTSPR004043.0E-21323IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-24374IPR002100Transcription factor, MADS-box
PfamPF003191.2E-201257IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-212338IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-213859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.3490195IPR002487Transcription factor, K-box
PfamPF014861.2E-694160IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0030308Biological Processnegative regulation of cell growth
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048530Biological Processfruit morphogenesis
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MRKGKVVIKK LDDKVERQVT FAKRKKSLMK KARELSVLCD VPIVLIIFSQ TDKLYSFCSQ  60
STSMENLIMR YQLAKEGHAA AVDSFHPDHE LYREETKESM MREIENLKMN LQLYGGGHGL  120
NLLTYDDLLR FELQLESSLQ NARARKFELM HQQQQKGRAE GKGKGELSLE IFMDEENQQF  180
YHLGQGSSWE HLMWQAERQM MTCQREVEDD FMRRHMKEQF PFNVDEQPTG LLQLPRTPPS  240
PLKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-16184182MEF2C
5f28_B6e-16184182MEF2C
5f28_C6e-16184182MEF2C
5f28_D6e-16184182MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in bud pedicels, petals, anthers, style, ovary, seeds and embryos. {ECO:0000269|PubMed:20088901, ECO:0000269|PubMed:20598091}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of fruit growth. Contributes to integument development. Controls organ size via cell expansion (PubMed:20088901). Involved in the regulation of longitudinal growth of the fruit evenly throughout the radial axis (PubMed:20598091). Functions redundantly with TT16/AGL32 to repress nucellus growth and promote its degeneration (PubMed:27233529). {ECO:0000269|PubMed:20088901, ECO:0000269|PubMed:20598091, ECO:0000269|PubMed:27233529}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00172DAPTransfer from AT1G31140Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00076141001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013639516.16e-90PREDICTED: MADS-box protein defh21
SwissprotQ9SA074e-81AGL63_ARATH; Agamous-like MADS-box protein AGL63
TrEMBLA0A078I2370.0A0A078I237_BRANA; BnaCnng10910D protein
STRINGBo5g065750.11e-163(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16860910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31140.22e-83GORDITA
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]