PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00076207001
Common NameGSBRNA2T00076207001, LOC106357911
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 229aa    MW: 24802.9 Da    PI: 4.4068
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00076207001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.53.1e-051762121354
                          HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          R+++++ +  Lr+++P         ++ a++L +Av+Y+ksL
  GSBRNA2T00076207001 176 RRKMKKMMGVLRRIVPGG-----DEMNTASVLDEAVQYLKSL 212
                          899*************94.....59***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.033163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.32E-5176217No hitNo description
SuperFamilySSF474593.53E-8176222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-6176219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MQNNQYPYFS DQMGDGNMNS APSYASASSF DALFPPCAKL PFHGVELQPS SVCPKNFVVF  60
DQTYDRSQVM FHPELTPRLV NSGLASSFQN EYVAGGYGNY GQQEVSSSSS HQEDPNEIDA  120
LLSTDEDDDD DESEDGGDSE EVSSTARNSS SGYNSSRRKQ SLSGSASSSN NDGKGRRKMK  180
KMMGVLRRIV PGGDEMNTAS VLDEAVQYLK SLKLEAQKLG VGHFSNQS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156179RRKQSLSGSASSSNNDGKGRRKMK
2174182GRRKMKKMM
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00076207001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532528e-77AK353252.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-23-J23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013653084.11e-168transcription factor bHLH144
SwissprotQ9ASX92e-96BH144_ARATH; Transcription factor bHLH144
TrEMBLA0A078I2651e-166A0A078I265_BRANA; BnaA07g07510D protein
STRINGBra030184.1-P1e-140(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61951626
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29950.24e-61bHLH family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]
  3. Cai Q, et al.
    The SAC51 Family Plays a Central Role in Thermospermine Responses in Arabidopsis.
    Plant Cell Physiol., 2016. 57(8): p. 1583-92
    [PMID:27388339]
  4. Yamamoto M,Takahashi T
    Thermospermine enhances translation of SAC51 and SACL1 in Arabidopsis.
    Plant Signal Behav, 2017. 12(1): p. e1276685
    [PMID:28045577]