PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00076451001
Common NameGSBRNA2T00076451001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 560aa    MW: 62588 Da    PI: 5.3449
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00076451001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.000711938221
                         EETTTTEEESSHHHHHHHHH CS
              zf-C2H2  2 kCpdCgksFsrksnLkrHir 21
                         +C++Cgk  s ++ L++H++
  GSBRNA2T00076451001 19 QCKHCGKQMSGWYRLRHHLS 38
                         8*****************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF049371.1E-38111255IPR007021Domain of unknown function DUF659
SuperFamilySSF530984.63E-24121525IPR012337Ribonuclease H-like domain
PfamPF056993.0E-5456546IPR008906HAT, C-terminal dimerisation domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MDIHEHGVLV GKEKRRRIQC KHCGKQMSGW YRLRHHLSGV GGDATPCVQV TSSVREMFRT  60
TTTTTGPKRG RTGDSEHVWC SYPNCLDFSS NGFREMMMTV SGRTIPDPHG SMFGEVLKEV  120
EDHVEKVKDS WGVTGCSILL DAWVDRKGHD LVTFVADSPA GSVYLKSFDV SDIKHDSEAL  180
ISIVDGLVDE VGVSNVVQII ACSASGWVGE LGEAYVGTKK GVFWSVSVSH CFELMLMKIG  240
EIDSLGEIVE AVNMITDYVN SNPLALKLVR DQDHSHGLLD MAVLSSEFEF FMPYLTVESI  300
FRARDELAAM FASSSDWNKE EEDIAISNLV NDSSLWESVE RVLKCSSPLI HGLIWLSSAN  360
NNQHVGHVYD NMDVIKESIA REFDNDELCY MPLWDVIDDV WNKLHSPLHA AGYFLNPAAF  420
YSTGFHLDAE VAIGLISSLV HIVKERDVQV KVATQLDVYK VREGCFNETS QADQVSGLSP  480
AEWWAEKASQ HPELQSFAIK VLSQTCEGAS RYMLKRRVAE KLLLTRGMSR CEKQHLEELA  540
FVHYNLHLQS CRAKLSEEQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11317KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00076451001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013673204.20.0uncharacterized protein BNAA01G30140D
TrEMBLA0A078I2M70.0A0A078I2M7_BRANA; BnaA01g30140D protein
STRINGBo1g138700.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM310534
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]