PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00076550001
Common NameGSBRNA2T00076550001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 395aa    MW: 44165.7 Da    PI: 5.924
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00076550001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.63.4e-09329383146
                          TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqk 46 
                          r+ WT+eE+e l+ +v+++  +      W++I ++ +    ++Rt+ ++k++w++
  GSBRNA2T00076550001 329 RLFWTPEEEEMLKVGVEKFSAEakknmPWRKILEMGQdvfhETRTPADLKDKWRN 383
                          678******************************9999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579037.68E-784139IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.104.4E-487134IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd154896.55E-489134No hitNo description
Gene3DG3DSA:1.10.10.605.5E-9324385IPR009057Homeodomain-like
PROSITE profilePS500907.793324385IPR017877Myb-like domain
SuperFamilySSF466897.48E-10327384IPR009057Homeodomain-like
SMARTSM007170.0014328387IPR001005SANT/Myb domain
PfamPF002491.6E-6332383IPR001005SANT/Myb domain
CDDcd116601.41E-10332383No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MRSKSFAVRS RPHRASRNSL DPYPSPAPLP GEANERVASG VSTKHCVSGD AERVPFDERD  60
VPSKKRHCPG TSETTRGGGG GGGSNLEACI VCDISDEGVS RCSGTGCILW FHGECLNPDL  120
GSGEDLAKTY CPYCWFRVLM MKDKSVREKT VGAESKDHSA VRDQELGGEK DVCSSEKEQL  180
QVEKDSDRSR EEEMPLTEER GYQHQEDTEK FQDVEEDKDD EETTKDQTTG GTGGKGDVSG  240
EEQDQSQQNE KPRRRRRQLT YSEISSDEST NERHGEGVTE QITSSAQVVT STSGAMKNQQ  300
RKHSLITKVA ESKAVRLDMS SFKTDQRKRL FWTPEEEEML KVGVEKFSAE AKKNMPWRKI  360
LEMGQDVFHE TRTPADLKDK WRNRMGVRSA KKTN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.221831e-128leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00076550001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937357e-57AB493735.1 Arabidopsis thaliana At5g03780 mRNA for hypothetical protein, partial cds, clone: RAAt5g03780.
GenBankAK1178777e-57AK117877.1 Arabidopsis thaliana At5g03780 mRNA for myb like protein, complete cds, clone: RAFL19-05-H14.
GenBankAY5195437e-57AY519543.1 Arabidopsis thaliana MYB transcription factor (At5g03780) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013597998.10.0PREDICTED: uncharacterized protein LOC106306077
TrEMBLA0A078JSP10.0A0A078JSP1_BRANA; BnaCnng59970D protein
STRINGBra037494.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76601327
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.22e-06MYB_related family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]