PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00076919001
Common NameGSBRNA2T00076919001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family SBP
Protein Properties Length: 386aa    MW: 43295.3 Da    PI: 8.4793
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00076919001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.41.3e-40155232178
                          --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                  SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                          +CqvegC+ dls+ak+yhr+h++Ce hsk p+v+vsg+e+rfCqqCsrfh lsefDe+krsCrrrL++hn+rrrk+++
  GSBRNA2T00076919001 155 RCQVEGCNLDLSSAKDYHRKHRICENHSKFPKVVVSGVERRFCQQCSRFHCLSEFDEKKRSCRRRLSDHNARRRKPNP 232
                          6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.8E-33149217IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.898153230IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.31E-38154234IPR004333Transcription factor, SBP-box
PfamPF031102.8E-31156229IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MECEWENLIS FGTSSAEIPR KLRPMDWETD EFDCSFPTAA YGSSSGLAHA FSKSSKSTSI  60
SSSSPEARTL NFTSEELGSS EEFAKGINTS PSLELSFGSG DPVLGLKLGK RTYFEDFWEV  120
ENGARGSALP ASLVSSSASP VKRTKSVTQK VQIPRCQVEG CNLDLSSAKD YHRKHRICEN  180
HSKFPKVVVS GVERRFCQQC SRFHCLSEFD EKKRSCRRRL SDHNARRRKP NPERTYEGKQ  240
QMDFVWNRFA LIHTRSEEKF LWPNPKPIPS RGLIQQSAKT RAELLSKEKV TISSSMGASQ  300
DLDGALSLLS NSTSWVPSDQ PTRFSLDHHP TTNLQPMAPR SVTQLSTVSD YWQPDPPAVE  360
GPTDLRRNAV GQFNENYFSL NQFYN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-261562291184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1211228KKRSCRRRLSDHNARRRK
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed constitutively during plant development, weak increase during flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:14573523}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00076919001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157 (Probable). Up-regulated by Turnip mosaic virus P1/HC-Pro protein, that acts as an antagonist of miR156. {ECO:0000269|PubMed:12202040, ECO:0000269|PubMed:12586064, ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531810.0AK353181.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-38-E06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013661732.10.0squamosa promoter-binding-like protein 2
RefseqXP_022564884.10.0squamosa promoter-binding-like protein 2
RefseqXP_022564885.10.0squamosa promoter-binding-like protein 2
SwissprotQ9S8400.0SPL2_ARATH; Squamosa promoter-binding-like protein 2
TrEMBLA0A078I1Y00.0A0A078I1Y0_BRANA; BnaC09g17430D protein
TrEMBLA0A3P6DV540.0A0A3P6DV54_BRAOL; Uncharacterized protein
STRINGBo9g058970.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65622644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.30.0squamosa promoter binding protein-like 2
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]