PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00076988001

Common Name

GSBRNA2T00076988001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Protein Properties

Length: 151aa MW: 17694.3 Da PI: 9.728

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00076988001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	53.9	3.2e-17	19	110	1	96
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrse 89 f k++ +d +++++ ++p + +++ + + s ++++ ++g sWev + +k+++ y+ ++GW++Fv++n L ++fv+F+++g+++ GSBRNA2T00076988001 19 FSKTFACADLSSECMRTFPFDLMKSLPK-EDLSNKMVIIAKWGSSWEVDI--SKNPRFyYMEKSGWNQFVRDNALGKNEFVTFTHKGSMC 105 6788888899999999999999988853.458889*************..**566669********************9999 PP E..EEEE CS B3 90 felvvkv 96 f v + GSBRNA2T00076988001 106 F--DVNI 110 9..5554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	5.4E-17	13	114	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	9.22E-18	14	117	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	6.51E-14	18	111	No hit	No description
Pfam	PF02362	2.0E-14	19	109	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.617	19	114	IPR003340	B3 DNA binding domain
SMART	SM01019	8.4E-17	19	114	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence Send to blast
MDMNSWFDRV KEDRKNLSFS KTFACADLSS ECMRTFPFDL MKSLPKEDLS NKMVIIAKWG 60 SSWEVDISKN PRFYYMEKSG WNQFVRDNAL GKNEFVTFTH KGSMCFDVNI YGKDEKEVVR 120 PPTMASSSKA FFTSNDVFMK VRRWRIKKEN *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	141	148	RRWRIKKE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00076988001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009141415.1	3e-90	PREDICTED: B3 domain-containing protein At3g17010-like
Refseq	XP_009141417.1	3e-90	PREDICTED: B3 domain-containing protein At3g17010-like
Refseq	XP_022557136.1	1e-90	B3 domain-containing protein At2g35310-like isoform X1
Swissprot	Q5PNU4	2e-43	Y2531_ARATH; B3 domain-containing protein At2g35310
TrEMBL	A0A078I217	1e-106	A0A078I217_BRANA; BnaA04g20470D protein
STRING	Bra021943.1-P	1e-89	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM565	21	135

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16210.2	6e-46	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]