PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00076996001
Common NameGSBRNA2T00076996001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 417aa    MW: 45365.1 Da    PI: 5.2614
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00076996001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY993.1e-31211269259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp++++itY++eHnh+
  GSBRNA2T00076996001 211 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRTDPNMLVITYTSEHNHP 269
                          699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-31204271IPR003657WRKY domain
PROSITE profilePS5081133.247205271IPR003657WRKY domain
SuperFamilySSF1182901.11E-26209271IPR003657WRKY domain
SMARTSM007741.5E-38210270IPR003657WRKY domain
PfamPF031063.6E-26212269IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MCSVFESLDM DNFQGDLTDV VRGLGSGHMT SSPGPPEGPF AINFHVDFPS VANSQMNPFG  60
DPFVSMTDPL LSLPANFSGA GDSKSNNSFA VFPNTTVDDH VKNQCSVFPR IRISQRNIIQ  120
DASKCNSPAM ATSSVTAASP WGMINVDSPN SPRNCLLVDN NNITSSSSQI QISSCPQNFG  180
ITRRKGQGKK VVCIPAPAAA SSRSSGEIVP SDLWAWRKYG QKPIKGSPYP RGYYRCSSSK  240
GCPARKQVER SRTDPNMLVI TYTSEHNHPW PTQRNALAGS TRSSSSSSSN PCSKSTIATT  300
SALSRVSQNK EEPNRSHLPF SSTPPPYVAK AVKEEDAEER KDNMEFDDVD DTYRPEFQHQ  360
LGDFFADLDE LEEDSLTMLL PQGFSGDNSG GGNLDNKRMI PDVFSDFFDD DSPRSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-25189272680Disease resistance protein RRS1
5w3x_D5e-25189272680Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00076996001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931470.0KM593147.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY53) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009141404.10.0PREDICTED: probable WRKY transcription factor 35
SwissprotO647470.0WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBLA0A078I1H80.0A0A078I1H8_BRANA; BnaA04g20400D protein
STRINGBra021934.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30852865
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.11e-150WRKY DNA-binding protein 35
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]