PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00077409001
Common NameGSBRNA2T00077409001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 402aa    MW: 45426.2 Da    PI: 6.4019
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00077409001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding353.2e-11352399247
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                          + WT+eE e l  +vk++G+  Wk I +  +     Rt+ ++k++w+++
  GSBRNA2T00077409001 352 KFWTPEEVEALRAGVKEYGKS-WKDIKNANPavfAERTEVDLKDKWRNL 399
                          67*****************88.************99***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.316346401IPR017930Myb domain
SuperFamilySSF466892.09E-13348400IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.0E-13348401IPR009057Homeodomain-like
SMARTSM007174.3E-5350401IPR001005SANT/Myb domain
CDDcd116601.47E-16352401No hitNo description
PfamPF002493.0E-8354399IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MEIIDKWVAE FLIRCQHNPR VSPTNLLSAL RFGDSGDCLK LKVSSVLLDL SDSLTRGSVD  60
EGTLDLLEIL EKLLLQQCSV ITESHKSAYC WTAAECTLRF MWPLDPLDGL FTDALERIWT  120
KRIGFLKESG SGLVSDELLK WEADLKKAVE DPEMYQRIRE SNIRYTAISF LNQLLKEQWG  180
LLGSSSLESV AQRRFRKRKA ENNVEGDGVR SREGPNGVDE RTGRMETEEE GTMGSQEQKH  240
ESSPDKGDKM AARELKDYLL EIQRQIDPST RQVQEPNDAF DHSVNVTPQP SRVNRTGTSG  300
QDHIETPDNA SEKGSSSQGT WSGRVRPRLS SPVPLNVSPL KKTNSPVRRP KKFWTPEEVE  360
ALRAGVKEYG KSWKDIKNAN PAVFAERTEV DLKDKWRNLV R*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1192198RRFRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00077409001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893550.0AC189355.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB043M07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013611029.10.0PREDICTED: uncharacterized protein LOC106317801
TrEMBLA0A078I1850.0A0A078I185_BRANA; BnaC09g33810D protein
STRINGBo9g134990.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77201731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.20.0MYB_related family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]