PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00077453001
Common NameGSBRNA2T00077453001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 166aa    MW: 19327.6 Da    PI: 9.8343
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00077453001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.36.2e-06102124123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y+Cp+C+ +F+++  +  H+++H
  GSBRNA2T00077453001 102 YTCPKCKGVFNTSQKFAAHMSSH 124
                          9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.8E-4100126IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.245102129IPR007087Zinc finger, C2H2
SMARTSM003550.0099102124IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280104124IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0090057Biological Processroot radial pattern formation
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MWNRPTSYRP TFLDKNCGIL NPKPVYAIPH QDSPYRQHLD MFSSSSKYNH DLHVLQEGQS  60
SRKSPKPNKS HDNYNSDEDG ISEDVQYDGR THSLPYEKYG PYTCPKCKGV FNTSQKFAAH  120
MSSHYKNETK KERDERYRAR IKKKYHKLSN NIHGGSKKIK LETME*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00077453001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935482e-33AB493548.1 Arabidopsis thaliana At2g15740 gene for hypothetical protein, partial cds, clone: RAAt2g15740.
GenBankAC0062482e-33AC006248.4 Arabidopsis thaliana chromosome 2 clone F9O13 map mi398, complete sequence.
GenBankCP0026852e-33CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009102241.21e-121PREDICTED: uncharacterized protein LOC103828387
TrEMBLA0A078I2561e-120A0A078I256_BRANA; BnaA07g01680D protein
TrEMBLA0A3P6AW851e-120A0A3P6AW85_BRACM; Uncharacterized protein
TrEMBLM4FET41e-120M4FET4_BRARP; Uncharacterized protein
STRINGBra039606.1-P1e-121(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19241958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18490.12e-63C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]