PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00077460001
Common NameGSBRNA2T00077460001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 492aa    MW: 54240.7 Da    PI: 5.6996
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00077460001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS308.31.7e-941264902374
                 GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          +e L++++++v+s++l+ a+ +L+rl+++ +sp+g+p+ R+a+yf+eAL + l++     ++  + + ts+++ +e++ a k fs +sPi
  GSBRNA2T00077460001 126 IEDLIRVVDCVDSDELQHAHVILSRLNQRlRSPAGRPLLRAAFYFKEALGSLLSG-----SNRNQNRLTSWTEIVERIRAIKEFSGISPI 210
                          689*************************99*************************.....7788899999999***************** PP

                 GRAS  91 lkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfe 177
                          + fsh+taNqaIl++++++     Hi+Df+i+ G+Q+++L++++a++++ +   lR+T+v+++e  s+ e++ ++e+L +fA+ l+++f+
  GSBRNA2T00077460001 211 PLFSHFTANQAILDSLHQSssPFAHIVDFEIGFGGQYASLMREIAEKSSATGgFLRVTAVVPEE--SAVETRLVKENLVQFAADLKIRFQ 298
                          ******************966678************************66655*********66..99********************** PP

                 GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerflealeyy 264
                          +++++++++++l+++++r+ +gE ++V ++  ++r l       + ++ +++ ++++sP+vvv+v++e      +++sF ++f++ +e+y
  GSBRNA2T00077460001 299 IDFVLMRTFKMLSFKAIRFVEGERTVVLISPVIFRRL-------NGISGFVNDLRRVSPNVVVFVDSEgwNGIsGAGSFQREFVSGFEFY 381
                          ************************************9.......33567*******************642235889************* PP

                 GRAS 265 salfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354
                          +++++sl+a +p+ +  ++ +E ++l+++i  +v ++  + + +    ++Wre++ +aG++ vpls+++  qa++l +k +++g++v ++
  GSBRNA2T00077460001 382 TMVLESLDAAAPNGDLVKKIIEGFVLRPKIAAAVEAAAVN-KRQGGGEMTWREAFCAAGMRMVPLSQFVDFQAECLAEKAQVRGFHVAKR 470
                          ************************************9999.55556689***************************************** PP

                 GRAS 355 sgslvlgWkdrpLvsvSaWr 374
                          +g+lvl+W++rpLv++SaWr
  GSBRNA2T00077460001 471 QGELVLCWHGRPLVATSAWR 490
                          *******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.19699470IPR005202Transcription factor GRAS
PfamPF035145.9E-92126490IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MRVPASSDSN SGGKNLVVYD EPTSVLGLRR SPTPTTVEEK PLVSAASGGD NQFPSDDHAM  60
RSMDWDSIMR ELELDDDSTP NLKPNFPPPA HFAVVDPPLP VFPDQLNPAE YGYDNNNEGG  120
GGFDIIEDLI RVVDCVDSDE LQHAHVILSR LNQRLRSPAG RPLLRAAFYF KEALGSLLSG  180
SNRNQNRLTS WTEIVERIRA IKEFSGISPI PLFSHFTANQ AILDSLHQSS SPFAHIVDFE  240
IGFGGQYASL MREIAEKSSA TGGFLRVTAV VPEESAVETR LVKENLVQFA ADLKIRFQID  300
FVLMRTFKML SFKAIRFVEG ERTVVLISPV IFRRLNGISG FVNDLRRVSP NVVVFVDSEG  360
WNGISGAGSF QREFVSGFEF YTMVLESLDA AAPNGDLVKK IIEGFVLRPK IAAAVEAAAV  420
NKRQGGGEMT WREAFCAAGM RMVPLSQFVD FQAECLAEKA QVRGFHVAKR QGELVLCWHG  480
RPLVATSAWR F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-2213148925378Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.246490.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and flowers. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00077460001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009114695.10.0PREDICTED: scarecrow-like protein 15
SwissprotO232100.0SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A078HZ600.0A0A078HZ60_BRANA; BnaA07g01720D protein
STRINGBra028100.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42912857
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.10.0GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]