PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00077739001
Common NameGSBRNA2T00077739001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 486aa    MW: 54128.6 Da    PI: 10.1358
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00077739001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3672.6e-21104195699
                          ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                   B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                           ++++l++++++lp kfa+ +g+++++  ++ l+de+g+sW++ l++ k+ g+ + ++GW +F+kang+k+  f  Fkl++ +++++v++
  GSBRNA2T00077739001 104 ATPSSLSRNQMYLPSKFARVNGLNNRQ-CEIDLRDEHGKSWTLDLTHHKSTGQAFVSNGWTSFCKANGIKAESFRRFKLVQ-TGTKPVLQ 191
                          5788999999***********999765.6**************************************************98.88889999 PP

                          EE-S CS
                   B3  96 vfrk 99 
                          ++ +
  GSBRNA2T00077739001 192 LCPN 195
                          9975 PP
2B336.49.3e-12222313599
                          -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--.TT-EEEEEE-SSSEE.. CS
                   B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLk.egDfvvFkldgrsefel 92 
                          ++++++lksgr+++p +f +++g+++ +  ++t+ +++g +W++ l  + k+++ ++++ G ++   ang+k +gD+++++ ++  +++ 
  GSBRNA2T00077739001 222 ELKPYMLKSGRVRVPASFGRANGINEVG--KITIVNKDGVEWKLHL-GDMKGRElFYIR-GLRDCFVANGIKkVGDSFTLEAIR-GGTNA 306
                          5689*******************99888..69999***********.455555536665.***********99********997.66667 PP

                          EEEEE-S CS
                   B3  93 vvkvfrk 99 
                           +k+++k
  GSBRNA2T00077739001 307 ILKICSK 313
                          9999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.8E-6778IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.141495IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-2192195IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-2095196IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.81799195IPR003340B3 DNA binding domain
SMARTSM010196.3E-2699196IPR003340B3 DNA binding domain
PfamPF023621.4E-20104195IPR003340B3 DNA binding domain
CDDcd100175.68E-20105194No hitNo description
Gene3DG3DSA:2.40.330.101.9E-7214312IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-7215312IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.9E-14218314IPR003340B3 DNA binding domain
PROSITE profilePS508638.6218314IPR003340B3 DNA binding domain
PfamPF023622.7E-11221313IPR003340B3 DNA binding domain
CDDcd100172.60E-8223312No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MVDPVMASST KKPIFIVDLS GQNSNPMIPD SFVSNHLKGN VQSTKLMKLT SDASVRTWEV  60
ELDGQRFGRG WKHFSDHHYK TLSKKRARTE TESSSENTYL VAHATPSSLS RNQMYLPSKF  120
ARVNGLNNRQ CEIDLRDEHG KSWTLDLTHH KSTGQAFVSN GWTSFCKANG IKAESFRRFK  180
LVQTGTKPVL QLCPNTEGGD EIESEDCSEP SSMNQNKIVA IELKPYMLKS GRVRVPASFG  240
RANGINEVGK ITIVNKDGVE WKLHLGDMKG RELFYIRGLR DCFVANGIKK VGDSFTLEAI  300
RGGTNAILKI CSKEASFDGY KTPQPRMIQA SQDEEKKETK VQKKSRVSAV GPSHRTRASN  360
RSSVGPSNLQ PKQPPQPCSI SDQVAKVKQC VVDALTDVRQ FRSELEVKER NLEAALLEID  420
VLGSSNAAAL IARWRRQLQK ENPLTPLTSP VPEQGDLSMT HQLAKLRHRI VNTLTSVRPF  480
RSELD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00077739001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013716729.10.0putative B3 domain-containing protein REM4
SwissprotQ9SB791e-136REM4_ARATH; Putative B3 domain-containing protein REM4
TrEMBLA0A078FJV80.0A0A078FJV8_BRANA; BnaA03g51640D protein
STRINGBra023991.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96581537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31630.11e-138B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]