PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00077740001
Common NameGSBRNA2T00077740001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 358aa    MW: 40782.4 Da    PI: 9.391
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00077740001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.66.5e-202097994
                         HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                   B3  9 dvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                         + +ks+ l +p kf++eh +gk +e+k+++l++  s ++W+vk+  ++++    lt+GWkeFv+++ L++gDfvvF+l++++ f  +v
  GSBRNA2T00077740001 20 SGSKSH-LNIPVKFFSEHiEGK-HEGKMVMLRSdASEKTWKVKM--EGQR----LTQGWKEFVEEHVLRVGDFVVFRLERDMLF--NV 97
                         445555.***********6555.57789999987889*******..8877....************************998888..44 PP
2B345.81.1e-14137237199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.....EEE-TTHHHHHHHHT--TT-EEEEEE- CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.....yvltkGWkeFvkangLkegDfvvFkld 85 
                          f++ + +s+++++g   lp +f++ +g++k++  ++++ d++g +W ++l++ k+  +     ++ ++GW+ F+  ng+++g++++++l+
  GSBRNA2T00077740001 137 FVTLTPTSSSFETGKQHLPASFTRGNGLIKPG--KIIMVDKKGDEWVMELKVGKTNVSimymyIMSRNGWRIFCGVNGVRAGESLTLELI 224
                          5666778999*******************777..7***************88444444546655566**********************9 PP

                          SSSEE..EEEEE-S CS
                   B3  86 grsefelvvkvfrk 99 
                          +  ++++++k+++k
  GSBRNA2T00077740001 225 R-GGESPMLKFCSK 237
                          8.777799999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-237104IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-219109IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.02911103IPR003340B3 DNA binding domain
CDDcd100171.17E-181298No hitNo description
SMARTSM010196.8E-2514103IPR003340B3 DNA binding domain
PfamPF023621.4E-142195IPR003340B3 DNA binding domain
SuperFamilySSF1019361.49E-15133240IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.7E-14137237IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.5E-20137238IPR003340B3 DNA binding domain
PfamPF023623.4E-14137237IPR003340B3 DNA binding domain
CDDcd100179.61E-14137236No hitNo description
PROSITE profilePS5086311.928137237IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MVNASLLSPA TPHFFQPLLS GSKSHLNIPV KFFSEHIEGK HEGKMVMLRS DASEKTWKVK  60
MEGQRLTQGW KEFVEEHVLR VGDFVVFRLE RDMLFNVTAL GSSYCEIQYT PSGSRRQDDE  120
EESVETEKEI KKNLTRFVTL TPTSSSFETG KQHLPASFTR GNGLIKPGKI IMVDKKGDEW  180
VMELKVGKTN VSIMYMYIMS RNGWRIFCGV NGVRAGESLT LELIRGGESP MLKFCSKMEQ  240
TSFEAEARAH KRAKWSQEIR EKTAEEGEPS HRARASNKTN ANKKNLQNKQ PCSVSDQLTE  300
VKHCVVSTIT SIRRFREELK TKEQELEGSL QEINNLVPCW HTERKMQRNQ TTSSSNN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00077740001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022572736.10.0B3 domain-containing protein REM5-like
TrEMBLA0A078FKB40.0A0A078FKB4_BRANA; BnaA03g51650D protein
STRINGBra023990.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2333634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.14e-89B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]